Search Results

Mutant Information

Mutant Name	FN723-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN723-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18249609	G-A	HOMO	INTRON
SBS	Chr1	19419318	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35070
SBS	Chr1	20842511	T-C	HOMO	UTR_5_PRIME
SBS	Chr1	25245073	T-G	HET	INTERGENIC
SBS	Chr1	30057106	T-C	HET	INTERGENIC
SBS	Chr1	34055245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	34055246	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	42540470	T-A	HET	INTERGENIC
SBS	Chr2	4402124	C-T	HOMO	INTERGENIC
SBS	Chr2	7411015	G-A	HET	INTERGENIC
SBS	Chr2	34575480	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g56480
SBS	Chr3	20008960	A-G	HET	INTERGENIC
SBS	Chr3	22506014	T-C	HET	INTERGENIC
SBS	Chr3	22562328	A-G	HET	INTERGENIC
SBS	Chr3	30767250	C-T	HET	INTRON
SBS	Chr4	8908813	G-C	HOMO	INTERGENIC
SBS	Chr4	14966498	T-C	HET	INTERGENIC
SBS	Chr4	31431238	C-T	HOMO	INTERGENIC
SBS	Chr5	5536791	C-T	HET	INTERGENIC
SBS	Chr6	17057473	C-G	HOMO	INTRON
SBS	Chr6	17883718	C-T	HET	INTERGENIC
SBS	Chr7	1937764	T-G	HET	INTERGENIC
SBS	Chr7	8994596	T-C	HOMO	INTRON
SBS	Chr7	9091392	T-C	HOMO	INTRON
SBS	Chr8	6635764	C-G	HET	INTRON
SBS	Chr9	999299	G-A	HET	INTERGENIC
SBS	Chr9	15024653	C-T	HET	INTERGENIC
SBS	Chr10	12037228	G-A	HOMO	INTERGENIC
SBS	Chr10	23067577	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g42754
SBS	Chr10	23187781	C-T	HOMO	INTRON
SBS	Chr11	1480409	G-T	HOMO	INTERGENIC
SBS	Chr11	18192471	G-A	HET	STOP_GAINED	LOC_Os11g31210
SBS	Chr11	18192472	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31210
SBS	Chr12	11157391	C-T	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1728793	1728794	1
Deletion	Chr5	2674108	2674111	3
Deletion	Chr4	3649927	3649929	2	LOC_Os04g06910
Deletion	Chr4	5017001	5037000	20000	2
Deletion	Chr4	5170142	5170146	4	LOC_Os04g09620
Deletion	Chr2	7151611	7151613	2
Deletion	Chr9	10333328	10333822	494	LOC_Os09g16910
Deletion	Chr10	11580264	11779321	199057	23
Deletion	Chr11	14276844	14756383	479539	73
Deletion	Chr1	14636421	14636430	9
Deletion	Chr9	14645905	14645942	37
Deletion	Chr10	14729267	14729268	1	LOC_Os10g28310
Deletion	Chr3	15363873	15363874	1
Deletion	Chr5	16501254	16501256	2
Deletion	Chr12	16807429	16807531	102	LOC_Os12g28430
Deletion	Chr6	16844183	16844184	1
Deletion	Chr10	16850001	17054000	204000	32
Deletion	Chr6	17092460	17093576	1116
Deletion	Chr10	17326690	17756725	430035	54
Deletion	Chr1	19418323	19418336	13	LOC_Os01g35070
Deletion	Chr2	20165100	20165103	3
Deletion	Chr1	20856905	20856910	5	LOC_Os01g37350
Deletion	Chr7	21127001	21249000	122000	23
Deletion	Chr1	24102290	24102292	2
Deletion	Chr3	25605789	25605797	8
Deletion	Chr7	27974913	27974920	7
Deletion	Chr1	28370114	28370115	1	LOC_Os01g49340
Deletion	Chr3	36136166	36136167	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	8766150	8766150	1	LOC_Os07g15210
Insertion	Chr4	22848265	22848266	2
Insertion	Chr9	19168294	19168295	2
Insertion	Chr12	2894463	2894463	1
Insertion	Chr5	25396395	25396395	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14754972	14756424

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	545945	Chr2	26803932
Translocation	Chr11	548930	Chr2	26803887
Translocation	Chr7	6114820	Chr3	22628228	2
Translocation	Chr7	6115289	Chr3	22628258	2
Translocation	Chr11	8939851	Chr8	16045133	LOC_Os11g16248
Translocation	Chr9	10333329	Chr7	5906568	LOC_Os09g16910
Translocation	Chr11	14276862	Chr10	4992678
Translocation	Chr11	14754881	Chr10	4992719
Translocation	Chr10	22706509	Chr7	5906867	LOC_Os10g42196
Translocation	Chr10	22706521	Chr9	10333869	LOC_Os10g42196
Translocation	Chr10	22706551	Chr9	10333326	2

Main menu