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Mutant Information

Mutant Name	FN724-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN724-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18867511	A-G	HET	INTERGENIC
SBS	Chr1	23332079	G-A	HET	INTERGENIC
SBS	Chr1	25551064	C-T	HET	INTERGENIC
SBS	Chr1	40745964	C-T	HET	INTRON
SBS	Chr2	1235572	A-T	HET	INTERGENIC
SBS	Chr2	26119139	T-G	HET	INTERGENIC
SBS	Chr2	33928371	G-A	HET	INTERGENIC
SBS	Chr3	495993	C-T	HET	INTERGENIC
SBS	Chr3	9994050	C-T	HOMO	INTERGENIC
SBS	Chr3	30232721	A-G	HET	INTRON
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr4	30274740	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	16720264	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g29300
SBS	Chr7	8404042	C-T	HET	INTERGENIC
SBS	Chr7	8558628	G-A	HET	INTERGENIC
SBS	Chr7	10337581	A-G	HET	INTERGENIC
SBS	Chr7	19044128	T-C	HET	INTERGENIC
SBS	Chr7	19156138	C-T	HET	INTERGENIC
SBS	Chr7	23995263	T-G	HOMO	INTERGENIC
SBS	Chr7	24982855	C-A	HOMO	INTERGENIC
SBS	Chr8	1048694	T-A	HET	INTRON
SBS	Chr8	3989795	A-C	HET	INTERGENIC
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr8	12702679	C-T	HOMO	INTERGENIC
SBS	Chr8	14239670	A-C	HOMO	INTERGENIC
SBS	Chr9	3108831	G-A	HET	INTERGENIC
SBS	Chr9	12776131	T-A	HET	INTERGENIC
SBS	Chr9	12776132	A-T	HET	INTERGENIC
SBS	Chr10	5029192	A-G	HOMO	INTRON
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr10	18686965	G-A	HET	INTERGENIC
SBS	Chr11	19542809	C-G	HET	INTERGENIC
SBS	Chr11	27587595	T-C	HOMO	INTRON
SBS	Chr12	18285287	G-A	HET	INTERGENIC
SBS	Chr12	21523842	A-T	HOMO	INTERGENIC
SBS	Chr12	23153650	C-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1467139	1467148	9
Deletion	Chr4	1583684	1583688	4	LOC_Os04g03620
Deletion	Chr6	2785551	2785558	7
Deletion	Chr5	3384669	3384679	10
Deletion	Chr9	4349164	4349165	1
Deletion	Chr9	4452372	4452380	8
Deletion	Chr2	5760032	5760035	3	LOC_Os02g10860
Deletion	Chr2	5837689	5837723	34
Deletion	Chr2	7902868	7902879	11	LOC_Os02g14390
Deletion	Chr7	8348087	8351308	3221	2
Deletion	Chr6	9561014	9561031	17
Deletion	Chr11	10975744	10975745	1	LOC_Os11g19210
Deletion	Chr9	11512949	11512967	18
Deletion	Chr2	12079171	12079172	1
Deletion	Chr11	13658423	13658431	8
Deletion	Chr7	14725435	14725437	2	LOC_Os07g25680
Deletion	Chr11	14777783	14777814	31
Deletion	Chr1	16629001	16708000	79000	13
Deletion	Chr8	17917778	17917789	11
Deletion	Chr5	18706226	18706251	25
Deletion	Chr3	19730745	19730752	7	LOC_Os03g35600
Deletion	Chr9	22239619	22239623	4
Deletion	Chr3	23857525	23857527	2	LOC_Os03g42820
Deletion	Chr6	28075150	28075154	4
Deletion	Chr7	28247372	28247373	1	LOC_Os07g47260

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15543210	15543211	2
Insertion	Chr12	11035161	11035161	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13094701	13816652
Inversion	Chr8	13102305	13816652
Inversion	Chr4	21090510	21202664
Inversion	Chr3	35876037	36325751	LOC_Os03g64290

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1631041	Chr2	30991346	LOC_Os12g03940
Translocation	Chr3	10134117	Chr1	18684954	LOC_Os01g33960
Translocation	Chr8	16788239	Chr3	19478448
Translocation	Chr6	31036065	Chr1	17086102	2
Translocation	Chr4	34970331	Chr2	26794092

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