Search Results

Mutant Information

Mutant Name	FN726-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN726-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	14093731	G-A	HET	INTERGENIC
SBS	Chr2	17321536	G-A	HET	INTERGENIC
SBS	Chr4	11360806	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20310
SBS	Chr4	14789100	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	16855668	A-G	HET	INTRON
SBS	Chr4	32962088	C-T	HOMO	INTERGENIC
SBS	Chr5	1467670	G-A	HET	INTERGENIC
SBS	Chr5	18147901	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	7574397	G-T	HET	INTERGENIC
SBS	Chr6	15166723	T-G	HET	INTERGENIC
SBS	Chr6	20151757	G-A	HET	INTERGENIC
SBS	Chr6	22157050	T-A	HET	UTR_3_PRIME
SBS	Chr6	22157051	T-A	HET	UTR_3_PRIME
SBS	Chr6	30965611	T-A	HOMO	INTERGENIC
SBS	Chr7	29324389	T-C	HET	UTR_3_PRIME
SBS	Chr8	12011033	C-T	HET	INTERGENIC
SBS	Chr8	17364060	C-G	HET	INTERGENIC
SBS	Chr9	9236679	G-C	HOMO	INTERGENIC
SBS	Chr9	13735406	G-A	HOMO	INTERGENIC
SBS	Chr11	10667584	G-A	HOMO	STOP_GAINED	LOC_Os11g18790
SBS	Chr12	4203469	A-C	HET	INTERGENIC
SBS	Chr12	16546853	C-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	704488	709005	4517	2
Deletion	Chr11	3215472	3215478	6
Deletion	Chr2	4525374	4525380	6
Deletion	Chr3	4925856	4925867	11	LOC_Os03g09900
Deletion	Chr2	5108975	5108976	1
Deletion	Chr8	5641497	5641500	3
Deletion	Chr6	5945992	5945994	2
Deletion	Chr9	8621594	8621595	1
Deletion	Chr7	10300266	10300273	7
Deletion	Chr8	11724517	11724525	8
Deletion	Chr6	14379089	14379090	1
Deletion	Chr10	14405602	14405604	2	LOC_Os10g27300
Deletion	Chr3	14923865	14923872	7	LOC_Os03g26030
Deletion	Chr12	15722001	15739000	17000	4
Deletion	Chr12	15744001	15769000	25000	7
Deletion	Chr6	17324029	17324040	11
Deletion	Chr11	21855654	21855663	9
Deletion	Chr10	22524837	22524842	5	LOC_Os10g41860
Deletion	Chr8	23146456	23146457	1
Deletion	Chr12	23371600	23371607	7
Deletion	Chr11	25551907	25551915	8
Deletion	Chr4	26787720	26787729	9
Deletion	Chr4	27621855	27621863	8
Deletion	Chr8	27899803	27899806	3
Deletion	Chr1	28425678	28425679	1
Deletion	Chr1	40167327	40167330	3

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	23644970	23644990	21
Insertion	Chr7	17244955	17244966	12	LOC_Os07g29360
Insertion	Chr7	14543375	14543381	7
Insertion	Chr1	4807434	4807435	2
Insertion	Chr11	25904717	25904718	2
Insertion	Chr2	4562584	4562585	2
Insertion	Chr3	14779851	14779851	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12686831	12729665
Inversion	Chr11	24281345	25056081

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1984156	Chr9	5093605
Translocation	Chr5	12598351	Chr2	17957750
Translocation	Chr12	15868624	Chr1	15856662
Translocation	Chr8	17546234	Chr4	12566278
Translocation	Chr6	23038184	Chr2	18483439
Translocation	Chr8	27378753	Chr6	10369539	LOC_Os08g43320

Main menu