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Mutant Information

Mutant Name	FN728-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN728-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22511530	G-A	HOMO	INTERGENIC
SBS	Chr1	25151918	C-T	HET	INTERGENIC
SBS	Chr1	32933273	C-T	HET	INTERGENIC
SBS	Chr1	37528988	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64690
SBS	Chr1	3963833	C-T	HET	INTERGENIC
SBS	Chr1	3963834	T-A	HET	INTERGENIC
SBS	Chr1	3963836	G-C	HET	INTERGENIC
SBS	Chr10	17154489	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32750
SBS	Chr10	18694206	C-A	HOMO	INTERGENIC
SBS	Chr10	5113859	A-T	HET	INTERGENIC
SBS	Chr11	1292332	C-T	HET	UTR_5_PRIME
SBS	Chr11	1292333	C-T	HET	UTR_5_PRIME
SBS	Chr11	20643021	C-T	HET	INTERGENIC
SBS	Chr12	16655006	C-T	HET	INTERGENIC
SBS	Chr12	2001816	G-A	HOMO	INTERGENIC
SBS	Chr12	20294507	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33610
SBS	Chr12	4514966	A-T	HET	INTERGENIC
SBS	Chr12	9423665	G-A	HET	INTERGENIC
SBS	Chr2	21908965	C-T	HET	INTERGENIC
SBS	Chr2	22684523	G-T	HET	INTERGENIC
SBS	Chr3	17844202	A-C	HOMO	UTR_5_PRIME
SBS	Chr3	19952129	C-T	HET	INTRON
SBS	Chr3	2471761	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	28239725	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	30641217	G-A	HET	INTERGENIC
SBS	Chr5	20785481	T-A	HET	INTERGENIC
SBS	Chr5	22621134	G-A	HET	INTERGENIC
SBS	Chr5	25080659	G-T	HET	INTERGENIC
SBS	Chr6	11120048	C-T	HET	INTERGENIC
SBS	Chr6	11120049	C-T	HET	INTERGENIC
SBS	Chr6	12921422	A-G	HET	INTERGENIC
SBS	Chr6	26825887	T-C	HOMO	INTERGENIC
SBS	Chr6	7175638	G-A	HET	INTERGENIC
SBS	Chr7	2690504	T-A	HET	INTERGENIC
SBS	Chr8	27345491	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	27943503	A-T	HET	INTRON
SBS	Chr8	7846910	A-C	HOMO	INTERGENIC
SBS	Chr8	8030686	C-T	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3341402	3341403	1	LOC_Os09g06920
Deletion	Chr7	3973521	3973524	3
Deletion	Chr1	4376852	4376857	5	LOC_Os01g08750
Deletion	Chr1	7283707	7283728	21	LOC_Os01g13090
Deletion	Chr9	8256903	8256906	3
Deletion	Chr11	8524916	8524917	1
Deletion	Chr3	11202011	11202022	11	LOC_Os03g19920
Deletion	Chr3	11650973	11650978	5	LOC_Os03g20550
Deletion	Chr5	14359356	14359358	2	LOC_Os05g24770
Deletion	Chr3	17844203	17844205	2	LOC_Os03g31310
Deletion	Chr8	17918653	17918662	9
Deletion	Chr5	18133356	18133379	23
Deletion	Chr5	18150636	18150637	1	LOC_Os05g31210
Deletion	Chr12	19448997	19448998	1
Deletion	Chr8	20356736	20356748	12
Deletion	Chr3	22133365	22133366	1	LOC_Os03g39780
Deletion	Chr10	22209607	22209608	1
Deletion	Chr4	24353284	24353286	2	LOC_Os04g41040
Deletion	Chr8	24924001	25075000	151000	21
Deletion	Chr4	25071557	25071558	1
Deletion	Chr5	25750033	25750034	1
Deletion	Chr6	26280067	26280074	7	LOC_Os06g43670
Deletion	Chr1	26454508	26454637	129	LOC_Os01g46510
Deletion	Chr8	27218508	27218509	1
Deletion	Chr4	30352622	30352623	1	LOC_Os04g51230
Deletion	Chr2	30488181	30488185	4
Deletion	Chr4	35302903	35302904	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	25687811	25687812	2
Insertion	Chr6	13454925	13454927	3
Insertion	Chr6	9763365	9763365	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9018068	Chr8	21985176
Translocation	Chr11	19817759	Chr1	39521938

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