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Mutant Information

Mutant Name	FN730-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN730-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5167446	C-T	HOMO	INTRON
SBS	Chr1	27646599	G-A	HET	INTERGENIC
SBS	Chr2	17070111	G-A	HET	INTERGENIC
SBS	Chr3	7688422	C-T	HET	STOP_GAINED	LOC_Os03g14170
SBS	Chr3	16203082	G-A	HET	INTERGENIC
SBS	Chr3	18764258	A-T	HOMO	INTERGENIC
SBS	Chr4	24016409	A-T	HOMO	INTRON
SBS	Chr5	17426250	C-T	HET	INTERGENIC
SBS	Chr5	18141203	A-T	HET	INTERGENIC
SBS	Chr6	25201002	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g41990
SBS	Chr7	18423520	G-A	HOMO	INTERGENIC
SBS	Chr8	2106338	C-A	HET	INTERGENIC
SBS	Chr8	15194880	G-A	HET	INTERGENIC
SBS	Chr8	18709670	C-A	HOMO	INTERGENIC
SBS	Chr9	11117043	A-T	HET	INTERGENIC
SBS	Chr9	15718130	G-T	HET	INTERGENIC
SBS	Chr10	1722490	T-A	HET	INTERGENIC
SBS	Chr10	18124939	C-T	HET	INTERGENIC
SBS	Chr10	18981564	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g35470
SBS	Chr12	10536652	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18250

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1910685	1910686	1
Deletion	Chr9	2475414	2475421	7
Deletion	Chr3	3305657	3305665	8	LOC_Os03g06560
Deletion	Chr8	4241461	4241470	9
Deletion	Chr9	4400137	4400501	364
Deletion	Chr8	4814020	4814023	3
Deletion	Chr1	5178060	5178061	1	LOC_Os01g09960
Deletion	Chr9	7411694	7411726	32
Deletion	Chr9	8842934	8842949	15	LOC_Os09g14830
Deletion	Chr9	10863102	10863103	1
Deletion	Chr2	11048674	11048896	222
Deletion	Chr9	11119927	11119928	1
Deletion	Chr9	12478809	12478821	12
Deletion	Chr2	12626746	12626752	6
Deletion	Chr1	15884417	15884432	15	LOC_Os01g28360
Deletion	Chr4	19793247	19793260	13
Deletion	Chr10	19823905	19823910	5
Deletion	Chr4	20224238	20224247	9
Deletion	Chr5	23312001	23357000	45000	6
Deletion	Chr12	24505858	24505859	1
Deletion	Chr5	25363652	25363657	5
Deletion	Chr7	25661122	25661125	3
Deletion	Chr12	26819075	26819079	4
Deletion	Chr8	28208001	28268000	60000	10
Deletion	Chr4	33090893	33090896	3
Deletion	Chr1	35577291	35577296	5
Deletion	Chr1	39186706	39186713	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	3369584	3369584	1
Insertion	Chr1	38342516	38342519	4
Insertion	Chr2	35638525	35638528	4
Insertion	Chr12	13440208	13440208	1
Insertion	Chr6	7220499	7220499	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5059882	6314876	LOC_Os04g09450
Inversion	Chr5	17352224	17360629

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	75691	Chr5	23356551	LOC_Os05g39770
Translocation	Chr8	78049	Chr5	23312294	LOC_Os05g39720
Translocation	Chr9	4400143	Chr4	28055191	LOC_Os04g47240
Translocation	Chr9	4400493	Chr4	28055182	LOC_Os04g47240
Translocation	Chr10	7685976	Chr8	25122224	2
Translocation	Chr8	10651620	Chr3	13457385	LOC_Os03g23250
Translocation	Chr9	16188881	Chr4	16575570	2
Translocation	Chr4	20082368	Chr1	13287547	2
Translocation	Chr4	20082722	Chr1	13287540	2

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