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Mutant Information

Mutant Name	FN732-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN732-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23436020	T-G	HOMO	INTERGENIC
SBS	Chr1	37308160	G-A	HET	UTR_3_PRIME
SBS	Chr1	9170404	C-A	HET	INTERGENIC
SBS	Chr12	26549663	G-A	HET	INTRON
SBS	Chr12	4995043	T-C	HET	INTERGENIC
SBS	Chr12	4995053	C-T	HET	INTERGENIC
SBS	Chr2	14236125	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24570
SBS	Chr2	32078010	G-T	HET	INTRON
SBS	Chr2	7582914	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13930
SBS	Chr2	7582917	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13930
SBS	Chr3	25016792	T-C	HOMO	INTERGENIC
SBS	Chr3	4661640	T-A	HOMO	UTR_3_PRIME
SBS	Chr4	10680975	T-C	HOMO	INTERGENIC
SBS	Chr5	11350776	C-T	HET	STOP_GAINED	LOC_Os05g19530
SBS	Chr5	20833405	C-A	HET	INTERGENIC
SBS	Chr5	20833406	C-G	HET	INTERGENIC
SBS	Chr5	24925210	C-T	HET	INTERGENIC
SBS	Chr5	29920696	C-A	HET	INTERGENIC
SBS	Chr6	11886027	G-A	HET	INTERGENIC
SBS	Chr6	14270898	C-T	HET	INTERGENIC
SBS	Chr6	2692577	A-T	HET	INTRON
SBS	Chr7	18011209	G-T	HET	INTERGENIC
SBS	Chr7	26791201	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	10505528	G-C	HOMO	INTERGENIC
SBS	Chr8	16034217	C-G	HOMO	INTERGENIC
SBS	Chr8	16034221	T-G	HOMO	INTERGENIC
SBS	Chr9	17152880	T-C	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	571329	571357	28
Deletion	Chr7	1833679	1833680	1
Deletion	Chr2	3526350	3526354	4
Deletion	Chr11	3583785	3583787	2	LOC_Os11g07170
Deletion	Chr1	3766612	3766974	362	LOC_Os01g07840
Deletion	Chr3	5642974	5642990	16	LOC_Os03g10980
Deletion	Chr2	6435279	6435281	2
Deletion	Chr8	7918315	7918320	5
Deletion	Chr5	8502146	8502172	26
Deletion	Chr1	12105001	12118000	13000	3
Deletion	Chr5	12243103	12243114	11
Deletion	Chr7	14173780	14173785	5
Deletion	Chr1	15534731	15534732	1
Deletion	Chr5	18631251	18631261	10
Deletion	Chr6	19589961	19589985	24
Deletion	Chr8	20012622	20012623	1
Deletion	Chr3	20913253	20913255	2
Deletion	Chr6	21780005	21780007	2
Deletion	Chr2	22678452	22678555	103
Deletion	Chr12	23053843	23053845	2
Deletion	Chr7	26885168	26885170	2
Deletion	Chr6	27249285	27249300	15
Deletion	Chr7	28662650	28662664	14
Deletion	Chr5	29387369	29387372	3
Deletion	Chr4	31909132	31909133	1
Deletion	Chr2	33584679	33696758	112079	16

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	33177130	33177130	1
Insertion	Chr11	23058872	23058872	1
Insertion	Chr2	2937606	2937606	1
Insertion	Chr2	35176583	35176583	1
Insertion	Chr8	13657406	13657407	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1859419	5251151
Inversion	Chr9	5251159	5790013	LOC_Os09g10620

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11740503	Chr7	2032129

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