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Mutant Information

Mutant Name	FN733-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN733-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16530192	C-T	HET	INTRON
SBS	Chr1	21428496	C-G	HOMO	INTRON
SBS	Chr10	9196182	A-T	HOMO	INTERGENIC
SBS	Chr12	1834684	C-T	HOMO	INTERGENIC
SBS	Chr2	29889845	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	3280192	G-T	HET	INTERGENIC
SBS	Chr4	17323104	G-C	HOMO	INTERGENIC
SBS	Chr4	35435028	A-T	HET	UTR_5_PRIME
SBS	Chr4	35458721	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59624
SBS	Chr5	10259964	C-A	HET	INTERGENIC
SBS	Chr5	13180891	T-A	HOMO	INTERGENIC
SBS	Chr5	21107162	A-T	HET	INTERGENIC
SBS	Chr5	22463759	T-A	HET	INTERGENIC
SBS	Chr6	21555945	T-A	HOMO	INTERGENIC
SBS	Chr6	28304037	G-A	HOMO	INTERGENIC
SBS	Chr6	5041920	G-T	HET	INTERGENIC
SBS	Chr6	7797539	G-C	HOMO	INTERGENIC
SBS	Chr7	10610113	T-A	HET	INTERGENIC
SBS	Chr7	17797044	C-A	HET	INTRON
SBS	Chr7	18509019	T-A	HET	INTERGENIC
SBS	Chr7	24636691	C-T	HOMO	INTERGENIC
SBS	Chr7	548407	A-T	HET	INTERGENIC
SBS	Chr8	2463113	C-G	HET	INTERGENIC
SBS	Chr9	15986739	G-T	HET	INTRON
SBS	Chr9	15986740	T-G	HET	INTRON
SBS	Chr9	8282426	C-G	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	299447	323003	23556	6
Deletion	Chr9	719896	719911	15
Deletion	Chr7	2938949	2938958	9
Deletion	Chr6	6654057	6654058	1
Deletion	Chr3	6938330	6948338	10008	3
Deletion	Chr1	7910190	7910192	2
Deletion	Chr3	8694206	8694217	11
Deletion	Chr3	9101273	9101309	36
Deletion	Chr9	13142325	13142327	2	LOC_Os09g21689
Deletion	Chr1	15137330	15137333	3
Deletion	Chr11	15269620	15269827	207
Deletion	Chr12	15384424	15384425	1
Deletion	Chr8	16205763	16205769	6	LOC_Os08g26660
Deletion	Chr2	17759323	17759887	564
Deletion	Chr1	18223001	18356000	133000	18
Deletion	Chr11	18314854	18314860	6	LOC_Os11g31390
Deletion	Chr3	18556871	18556879	8
Deletion	Chr7	19630116	19630754	638
Deletion	Chr3	23918906	23918907	1
Deletion	Chr3	26016293	26016300	7	LOC_Os03g46030
Deletion	Chr6	27453580	27453581	1
Deletion	Chr3	29260848	29260853	5
Deletion	Chr4	30045245	30045279	34
Deletion	Chr3	30336760	30336769	9	LOC_Os03g52900
Deletion	Chr4	32076461	32076467	6
Deletion	Chr2	33483565	33483573	8	LOC_Os02g54650
Deletion	Chr4	34610258	34610260	2
Deletion	Chr1	41582203	41582218	15
Deletion	Chr1	42904428	42904432	4	LOC_Os01g74100

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15468853	15468853	1
Insertion	Chr5	29627689	29627692	4
Insertion	Chr5	8002690	8002690	1	LOC_Os05g14240

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3100527	17759885
Inversion	Chr2	3103894	17759336	LOC_Os02g06205
Inversion	Chr1	17730830	19051000
Inversion	Chr1	17730841	20189664
Inversion	Chr1	18174894	18196308
Inversion	Chr1	18223363	18474046
Inversion	Chr1	18523687	19051024

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14643591	Chr7	2367381
Translocation	Chr7	19630748	Chr1	18474050

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