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Mutant Information

Mutant Name	FN735-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN735-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32819120	G-A	HET	INTRON
SBS	Chr1	32819121	C-A	HET	INTRON
SBS	Chr1	35739658	T-A	HET	INTRON
SBS	Chr1	41259144	T-A	HET	INTRON
SBS	Chr10	4825944	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g08920
SBS	Chr10	9013621	C-A	HET	INTERGENIC
SBS	Chr11	19434080	A-T	HET	INTRON
SBS	Chr11	24237317	T-A	HET	INTERGENIC
SBS	Chr11	25207931	C-T	HET	INTERGENIC
SBS	Chr11	704368	T-C	HET	INTERGENIC
SBS	Chr12	12191947	T-C	HOMO	INTERGENIC
SBS	Chr12	13291923	A-G	HOMO	INTERGENIC
SBS	Chr12	2798497	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	9867512	G-A	HOMO	INTERGENIC
SBS	Chr12	9867520	T-A	HOMO	INTERGENIC
SBS	Chr2	33110260	T-G	HET	INTERGENIC
SBS	Chr2	35200810	T-G	HET	UTR_5_PRIME
SBS	Chr3	27322460	T-A	HET	INTERGENIC
SBS	Chr3	7129959	C-T	HOMO	INTRON
SBS	Chr4	13099616	A-G	HET	INTRON
SBS	Chr5	13782256	C-A	HOMO	INTERGENIC
SBS	Chr5	1965199	A-G	HOMO	INTERGENIC
SBS	Chr6	6181979	C-G	HOMO	INTERGENIC
SBS	Chr6	6235110	A-C	HOMO	INTERGENIC
SBS	Chr6	973047	G-A	HOMO	INTRON
SBS	Chr7	25432444	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g42490
SBS	Chr9	10094023	T-C	HET	INTERGENIC
SBS	Chr9	12302775	A-G	HET	INTERGENIC
SBS	Chr9	4185710	G-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1110633	1110636	3
Deletion	Chr1	2101338	2101343	5
Deletion	Chr5	4499360	4499415	55
Deletion	Chr11	7488678	7488687	9
Deletion	Chr5	7949444	7949473	29
Deletion	Chr2	7986116	7986127	11	LOC_Os02g14490
Deletion	Chr10	8837279	8837280	1	LOC_Os10g17520
Deletion	Chr11	9412195	9412196	1
Deletion	Chr12	10234181	10263510	29329	4
Deletion	Chr10	12563978	12563990	12
Deletion	Chr5	14867836	14867839	3
Deletion	Chr1	15209057	15209073	16
Deletion	Chr4	17226888	17226897	9
Deletion	Chr11	18034144	18037195	3051	LOC_Os11g31000
Deletion	Chr7	19026030	19026032	2
Deletion	Chr5	20298292	20298304	12
Deletion	Chr1	23121622	23121623	1
Deletion	Chr2	25877364	25877365	1
Deletion	Chr5	26847771	26847777	6	LOC_Os05g46320
Deletion	Chr3	33289362	33289363	1
Deletion	Chr1	38730103	38731378	1275	LOC_Os01g66680
Deletion	Chr1	38875578	38875580	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	32604039	32604039	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1345397	3401216	LOC_Os01g03330

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10074340	Chr3	8411949	2
Translocation	Chr12	17680413	Chr1	33032495
Translocation	Chr12	22924860	Chr11	16611811
Translocation	Chr11	28406591	Chr7	15855150
Translocation	Chr3	34181004	Chr2	13952309

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