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Mutant Information

Mutant NameFN736-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN736-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 20
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr1011852717C-THOMOINTERGENIC
SBSChr1018902887T-AHOMOINTRON
SBSChr1121489251G-AHETINTRON
SBSChr115203825A-GHOMOINTERGENIC
SBSChr1225977438C-AHETINTERGENIC
SBSChr1226234360C-AHETINTERGENIC
SBSChr128758108G-AHOMOINTERGENIC
SBSChr129965154A-THOMOINTERGENIC
SBSChr129965185C-THOMOINTERGENIC
SBSChr332933802C-THOMOINTRON
SBSChr34572742G-AHOMOINTERGENIC
SBSChr510307184C-THOMOINTERGENIC
SBSChr519074281T-AHETINTRON
SBSChr625003654G-THETINTERGENIC
SBSChr68209978G-AHOMOSYNONYMOUS_CODING
SBSChr68339729G-AHOMOINTERGENIC
SBSChr720350370G-THETINTERGENIC
SBSChr720350371G-THETINTERGENIC
SBSChr723560518C-THETNON_SYNONYMOUS_CODINGLOC_Os07g39320
SBSChr724742669G-AHETINTERGENIC

Deletions: 20
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr14394872439488210
DeletionChr8464929746492981
DeletionChr6507395850739624
DeletionChr58100045810007227
DeletionChr89582547958256215
DeletionChr1110508323105083274LOC_Os11g18620
DeletionChr6129558721295588715
DeletionChr31792754817943662161143
DeletionChr917965225179652283
DeletionChr418063031180665513520LOC_Os04g30260
DeletionChr718356824183568251
DeletionChr12226559972265600811LOC_Os12g36940
DeletionChr522742596227426015
DeletionChr125483765254837694
DeletionChr7258768062587681610
DeletionChr726795829267958312LOC_Os07g44910
DeletionChr727107782271077886
DeletionChr529017191290171932
DeletionChr529017192290171942
DeletionChr234672863346728652

Insertions: 7
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr112149114121491152
InsertionChr12845448284544821
InsertionChr231487063314870642
InsertionChr3582163358216331
InsertionChr5588850858885081
InsertionChr824213433242134364
InsertionChr9150247471502476418

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr8597921418186376
InversionChr581419548686435
InversionChr581419688686440
InversionChr111295557015354829LOC_Os11g22540

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1212048462Chr523910282LOC_Os05g40780
TranslocationChr819733148Chr316762090LOC_Os08g31814
TranslocationChr423938591Chr35772519LOC_Os03g11210