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Mutant Information |
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Mutant Name | FN736-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN736-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 20
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr10 | 11852717 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 18902887 | T-A | HOMO | INTRON | |
SBS | Chr11 | 21489251 | G-A | HET | INTRON | |
SBS | Chr11 | 5203825 | A-G | HOMO | INTERGENIC | |
SBS | Chr12 | 25977438 | C-A | HET | INTERGENIC | |
SBS | Chr12 | 26234360 | C-A | HET | INTERGENIC | |
SBS | Chr12 | 8758108 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 9965154 | A-T | HOMO | INTERGENIC | |
SBS | Chr12 | 9965185 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 32933802 | C-T | HOMO | INTRON | |
SBS | Chr3 | 4572742 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 10307184 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 19074281 | T-A | HET | INTRON | |
SBS | Chr6 | 25003654 | G-T | HET | INTERGENIC | |
SBS | Chr6 | 8209978 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr6 | 8339729 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 20350370 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 20350371 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 23560518 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g39320 |
SBS | Chr7 | 24742669 | G-A | HET | INTERGENIC |
Deletions: 20
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr1 | 4394872 | 4394882 | 10 | |
Deletion | Chr8 | 4649297 | 4649298 | 1 | |
Deletion | Chr6 | 5073958 | 5073962 | 4 | |
Deletion | Chr5 | 8100045 | 8100072 | 27 | |
Deletion | Chr8 | 9582547 | 9582562 | 15 | |
Deletion | Chr11 | 10508323 | 10508327 | 4 | LOC_Os11g18620 |
Deletion | Chr6 | 12955872 | 12955887 | 15 | |
Deletion | Chr3 | 17927548 | 17943662 | 16114 | 3 |
Deletion | Chr9 | 17965225 | 17965228 | 3 | |
Deletion | Chr4 | 18063031 | 18066551 | 3520 | LOC_Os04g30260 |
Deletion | Chr7 | 18356824 | 18356825 | 1 | |
Deletion | Chr12 | 22655997 | 22656008 | 11 | LOC_Os12g36940 |
Deletion | Chr5 | 22742596 | 22742601 | 5 | |
Deletion | Chr1 | 25483765 | 25483769 | 4 | |
Deletion | Chr7 | 25876806 | 25876816 | 10 | |
Deletion | Chr7 | 26795829 | 26795831 | 2 | LOC_Os07g44910 |
Deletion | Chr7 | 27107782 | 27107788 | 6 | |
Deletion | Chr5 | 29017191 | 29017193 | 2 | |
Deletion | Chr5 | 29017192 | 29017194 | 2 | |
Deletion | Chr2 | 34672863 | 34672865 | 2 |
Insertions: 7
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 5979214 | 18186376 | |
Inversion | Chr5 | 8141954 | 8686435 | |
Inversion | Chr5 | 8141968 | 8686440 | |
Inversion | Chr11 | 12955570 | 15354829 | LOC_Os11g22540 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 12048462 | Chr5 | 23910282 | LOC_Os05g40780 |
Translocation | Chr8 | 19733148 | Chr3 | 16762090 | LOC_Os08g31814 |
Translocation | Chr4 | 23938591 | Chr3 | 5772519 | LOC_Os03g11210 |