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Mutant Information

Mutant Name	FN737-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN737-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36212050	T-C	HET	INTERGENIC
SBS	Chr1	42381849	A-C	HET	INTERGENIC
SBS	Chr10	22342123	T-C	HET	INTERGENIC
SBS	Chr11	18932539	T-A	HET	INTERGENIC
SBS	Chr12	26077343	C-T	HOMO	INTERGENIC
SBS	Chr12	4134251	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	12977067	G-A	HET	INTERGENIC
SBS	Chr2	25429162	G-A	HOMO	INTERGENIC
SBS	Chr3	15225444	C-T	HET	UTR_3_PRIME
SBS	Chr3	19262702	C-T	HOMO	INTRON
SBS	Chr3	9640158	C-T	HET	SPLICE_SITE_REGION
SBS	Chr4	28543675	C-T	HET	INTERGENIC
SBS	Chr4	9961686	C-T	HOMO	INTERGENIC
SBS	Chr4	9961688	G-A	HOMO	INTERGENIC
SBS	Chr5	10136522	A-T	HET	INTERGENIC
SBS	Chr5	10414921	G-T	HET	INTRON
SBS	Chr5	24833382	A-T	HOMO	INTRON
SBS	Chr5	7752349	G-A	HET	INTERGENIC
SBS	Chr7	15191613	C-G	HOMO	INTERGENIC
SBS	Chr7	23902626	A-G	HOMO	INTERGENIC
SBS	Chr8	17313478	A-T	HOMO	INTERGENIC
SBS	Chr9	4521643	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08640
SBS	Chr9	5770314	T-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	159607	159672	65
Deletion	Chr10	926374	926375	1	2
Deletion	Chr9	1244155	1244156	1
Deletion	Chr2	1655817	1655818	1
Deletion	Chr3	2112012	2112032	20	LOC_Os03g04520
Deletion	Chr8	2170243	2170244	1
Deletion	Chr2	3282712	3282742	30
Deletion	Chr11	3944663	3944665	2	LOC_Os11g07730
Deletion	Chr5	4622792	4622793	1	LOC_Os05g08460
Deletion	Chr8	5449345	5449360	15
Deletion	Chr6	8375879	8375880	1	LOC_Os06g14780
Deletion	Chr12	8624001	8675000	51000	10
Deletion	Chr6	11189433	11189450	17
Deletion	Chr7	14168961	14168977	16
Deletion	Chr10	14180513	14180516	3
Deletion	Chr1	16231111	16231120	9
Deletion	Chr10	16745376	16745382	6
Deletion	Chr7	19528897	19528899	2
Deletion	Chr1	22305117	22305118	1
Deletion	Chr11	23684028	23684049	21
Deletion	Chr5	24273998	24274002	4
Deletion	Chr4	24423190	24423191	1
Deletion	Chr11	27482124	27482236	112
Deletion	Chr4	28559424	28559426	2
Deletion	Chr7	29607989	29607999	10
Deletion	Chr1	30141662	30141663	1
Deletion	Chr4	33477813	33477815	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36294865	36294865	1
Insertion	Chr11	28281687	28281690	4
Insertion	Chr2	6394878	6394879	2
Insertion	Chr3	8254837	8254838	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5823549	8368815	2
Inversion	Chr12	8542950	8674656	LOC_Os12g15222
Inversion	Chr5	10153460	10966246	LOC_Os05g17640
Inversion	Chr5	10153495	10966261	LOC_Os05g17640
Inversion	Chr5	10843847	10880140	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1877794	Chr2	13467141
Translocation	Chr12	3653301	Chr9	6641921
Translocation	Chr12	8169321	Chr3	16033690	LOC_Os03g27920
Translocation	Chr10	13371108	Chr8	27373550
Translocation	Chr3	34394782	Chr2	31696446	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr9	9136904	9138495	1591

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