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Mutant Information

Mutant Name	FN738-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN738-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25420086	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	9611467	T-A	HET	INTERGENIC
SBS	Chr10	10366446	A-T	HET	INTERGENIC
SBS	Chr10	8939327	G-C	HET	INTERGENIC
SBS	Chr12	17953441	A-G	HET	INTERGENIC
SBS	Chr2	32769282	C-A	HET	INTERGENIC
SBS	Chr2	32769283	A-T	HET	INTERGENIC
SBS	Chr3	19319072	G-T	HET	INTERGENIC
SBS	Chr3	19319073	C-T	HET	INTERGENIC
SBS	Chr4	10912817	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	14882260	C-T	HET	INTERGENIC
SBS	Chr4	271330	T-G	HOMO	INTERGENIC
SBS	Chr4	32523044	C-T	HOMO	INTERGENIC
SBS	Chr5	11525906	C-T	HET	INTRON
SBS	Chr5	28699271	T-G	HET	INTERGENIC
SBS	Chr5	28788053	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g50230
SBS	Chr5	28788054	G-T	HET	SYNONYMOUS_CODING
SBS	Chr6	10146362	C-T	HOMO	INTERGENIC
SBS	Chr6	11005410	C-G	HET	INTERGENIC
SBS	Chr6	12853604	A-T	HET	INTERGENIC
SBS	Chr6	20471221	T-A	HET	INTERGENIC
SBS	Chr6	5286483	C-T	HOMO	INTERGENIC
SBS	Chr7	20101391	C-A	HOMO	INTERGENIC
SBS	Chr8	21875024	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr8	4060390	C-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1839938	1839954	16
Deletion	Chr10	4348001	4902000	554000	94
Deletion	Chr10	4909001	5091000	182000	34
Deletion	Chr10	5106001	5124000	18000	3
Deletion	Chr10	5135001	5353000	218000	33
Deletion	Chr4	6660116	7699862	1039746	153
Deletion	Chr2	7256896	7257230	334
Deletion	Chr7	8307635	8307644	9
Deletion	Chr11	11970285	11970286	1	LOC_Os11g20650
Deletion	Chr5	12353354	12353364	10	LOC_Os05g20990
Deletion	Chr2	12457130	12457131	1
Deletion	Chr11	12630878	12630886	8
Deletion	Chr4	12962726	12962736	10
Deletion	Chr12	14037392	14037402	10
Deletion	Chr7	15557329	15557330	1
Deletion	Chr12	16678844	16679921	1077	LOC_Os12g28240
Deletion	Chr5	17684461	17684462	1
Deletion	Chr12	17938092	17938098	6
Deletion	Chr3	25034530	25034532	2
Deletion	Chr8	28224041	28224053	12
Deletion	Chr1	28924643	28924647	4	LOC_Os01g50380
Deletion	Chr1	31631525	31631526	1
Deletion	Chr3	33004067	33004071	4
Deletion	Chr1	36759670	36759691	21	LOC_Os01g63444
Deletion	Chr1	37728889	37728890	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	18228468	18228469	2

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1224058	Chr9	15716639	LOC_Os11g03290
Translocation	Chr12	8078423	Chr7	12969252
Translocation	Chr12	8078440	Chr7	12968045
Translocation	Chr12	9228980	Chr4	7080218
Translocation	Chr12	13397040	Chr9	16355281
Translocation	Chr12	16678874	Chr11	1224098	2
Translocation	Chr12	16679906	Chr9	15716625

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