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Mutant Information

Mutant Name	FN739-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN739-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14676247	G-A	HET	INTERGENIC
SBS	Chr1	1810029	G-C	HET	INTERGENIC
SBS	Chr1	22682908	C-G	HET	INTERGENIC
SBS	Chr1	22865359	A-G	HET	INTERGENIC
SBS	Chr10	10595825	A-G	HOMO	INTERGENIC
SBS	Chr10	20259063	A-T	HOMO	UTR_3_PRIME
SBS	Chr10	9009080	C-T	HOMO	INTRON
SBS	Chr11	1117111	T-C	HET	INTERGENIC
SBS	Chr11	14516679	A-G	HOMO	INTERGENIC
SBS	Chr11	14516681	T-A	HOMO	INTERGENIC
SBS	Chr11	14516682	C-A	HOMO	INTERGENIC
SBS	Chr11	26850045	G-T	HET	SYNONYMOUS_CODING
SBS	Chr11	27587669	G-A	HET	INTRON
SBS	Chr11	3947268	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g07730
SBS	Chr12	11800489	C-T	HET	INTERGENIC
SBS	Chr12	14970991	G-A	HET	INTERGENIC
SBS	Chr12	15111814	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26010
SBS	Chr2	27830085	G-A	HET	INTERGENIC
SBS	Chr3	17283786	G-A	HOMO	INTERGENIC
SBS	Chr3	2187377	G-T	HET	INTERGENIC
SBS	Chr3	23721164	A-T	HET	INTRON
SBS	Chr4	12082710	G-C	HET	INTERGENIC
SBS	Chr4	20376166	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g33640
SBS	Chr4	34499168	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	8323878	T-C	HET	INTERGENIC
SBS	Chr5	26417080	C-G	HET	INTERGENIC
SBS	Chr5	6799587	A-G	HET	INTERGENIC
SBS	Chr6	24690139	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	25913937	G-T	HOMO	INTERGENIC
SBS	Chr6	8480715	A-T	HOMO	INTERGENIC
SBS	Chr7	13111591	A-G	HET	INTERGENIC
SBS	Chr7	14221291	C-T	HET	INTERGENIC
SBS	Chr7	15102752	G-A	HET	INTRON
SBS	Chr8	22509271	T-G	HET	INTRON
SBS	Chr8	2275999	A-T	HET	INTERGENIC
SBS	Chr9	11245517	C-A	HET	INTERGENIC
SBS	Chr9	1206636	G-A	HET	INTRON
SBS	Chr9	13063837	T-A	HET	INTERGENIC
SBS	Chr9	7793930	T-C	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1739739	1739740	1
Deletion	Chr1	3878115	3878125	10	LOC_Os01g08020
Deletion	Chr5	6799580	6799581	1
Deletion	Chr3	7546989	7546993	4
Deletion	Chr6	8423009	8423010	1
Deletion	Chr7	9247159	9247177	18	LOC_Os07g15910
Deletion	Chr11	10749632	10749636	4
Deletion	Chr7	13391386	13391393	7	LOC_Os07g23730
Deletion	Chr11	14808001	14819000	11000	LOC_Os11g25970
Deletion	Chr6	16354783	16354785	2
Deletion	Chr2	18070671	18070677	6
Deletion	Chr12	19973545	19973549	4	LOC_Os12g33050
Deletion	Chr12	23867099	23867100	1
Deletion	Chr5	27646289	27646292	3
Deletion	Chr7	27995332	27995339	7
Deletion	Chr3	28852215	28852228	13	2
Deletion	Chr2	28961001	29041000	80000	11
Deletion	Chr4	31452567	31452579	12
Deletion	Chr1	34409129	34409137	8	LOC_Os01g59490
Deletion	Chr4	34920405	34920428	23
Deletion	Chr1	36360835	36360847	12
Deletion	Chr1	36405661	36405675	14
Deletion	Chr1	36474219	36474221	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	181913	181914	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12668769	12734647	LOC_Os09g21110
Inversion	Chr5	12742354	12818803
Inversion	Chr11	14807659	19233110
Inversion	Chr11	14818627	19232373	LOC_Os11g25970

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6993245	Chr3	22046068
Translocation	Chr9	8102895	Chr4	11882668	2
Translocation	Chr9	8102904	Chr4	11780229	2
Translocation	Chr4	15030926	Chr2	10522453	2

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