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Mutant Information

Mutant Name	FN743-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN743-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26813929	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g46980
SBS	Chr1	26813931	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g46980
SBS	Chr1	3642558	A-C	HOMO	INTERGENIC
SBS	Chr11	16015439	G-A	HET	INTERGENIC
SBS	Chr12	26640506	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	29741457	C-A	HET	UTR_5_PRIME
SBS	Chr2	30071482	T-A	HET	INTRON
SBS	Chr2	4831052	T-A	HOMO	INTERGENIC
SBS	Chr3	2436427	C-T	HET	INTRON
SBS	Chr3	30780825	A-G	HET	INTRON
SBS	Chr4	1405342	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03300
SBS	Chr4	27027190	C-G	HOMO	INTERGENIC
SBS	Chr4	31631014	G-A	HET	INTRON
SBS	Chr4	32986057	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55450
SBS	Chr4	32986058	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55450
SBS	Chr4	4124985	C-G	HET	SPLICE_SITE_REGION
SBS	Chr5	18718996	T-G	HET	INTERGENIC
SBS	Chr5	9191225	T-A	HET	INTRON
SBS	Chr6	17252100	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr7	922426	C-T	HET	INTERGENIC
SBS	Chr9	18702831	T-G	HET	INTERGENIC
SBS	Chr9	4742862	T-C	HET	INTERGENIC
SBS	Chr9	8330241	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14070

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	809731	809743	12
Deletion	Chr1	4169995	4170011	16
Deletion	Chr11	7791300	7791301	1
Deletion	Chr9	7798590	7798591	1	LOC_Os09g13470
Deletion	Chr5	8958344	8958345	1
Deletion	Chr10	16175369	16175387	18
Deletion	Chr8	17158105	17158121	16	LOC_Os08g28120
Deletion	Chr10	20113001	20451000	338000	55
Deletion	Chr6	20290417	20290420	3
Deletion	Chr10	20485001	20520000	35000	8
Deletion	Chr6	22531463	22531474	11
Deletion	Chr6	23221998	23221999	1
Deletion	Chr4	29447133	29447144	11
Deletion	Chr6	29983484	29983487	3
Deletion	Chr3	31200207	31200213	6
Deletion	Chr3	32352421	32352422	1
Deletion	Chr4	32977554	32977555	1	LOC_Os04g55440
Deletion	Chr2	35504139	35504148	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2549378	2549399	22
Insertion	Chr5	16380269	16380272	4
Insertion	Chr7	11042053	11042055	3	LOC_Os07g18690
Insertion	Chr8	4666307	4666309	3

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6366354	Chr4	16083639	2
Translocation	Chr12	10629446	Chr9	16923132	2
Translocation	Chr10	18195440	Chr9	3015564
Translocation	Chr12	18514249	Chr5	1712303	LOC_Os12g30824
Translocation	Chr9	19806189	Chr2	18843913
Translocation	Chr10	20113114	Chr1	28497006
Translocation	Chr10	20113303	Chr1	28496731

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