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Mutant Information

Mutant Name	FN745-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN745-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11560176	A-C	HOMO	INTERGENIC
SBS	Chr1	42274948	A-T	HOMO	INTERGENIC
SBS	Chr1	42274951	G-A	HOMO	INTERGENIC
SBS	Chr10	15381366	G-T	HET	INTERGENIC
SBS	Chr11	17130203	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	17577533	T-A	HET	INTERGENIC
SBS	Chr11	17577536	T-C	HET	INTERGENIC
SBS	Chr11	26717911	C-G	HET	INTERGENIC
SBS	Chr11	5484535	G-C	HOMO	INTERGENIC
SBS	Chr12	11040761	T-C	HET	INTERGENIC
SBS	Chr12	20954630	C-T	HET	INTERGENIC
SBS	Chr2	26600783	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g44070
SBS	Chr3	19635456	C-T	HET	INTERGENIC
SBS	Chr3	31695534	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g55670
SBS	Chr4	20842785	A-T	HET	INTERGENIC
SBS	Chr4	28536460	C-A	HET	UTR_5_PRIME
SBS	Chr4	7121939	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	11663551	C-A	HET	INTRON
SBS	Chr5	3258516	A-T	HET	INTRON
SBS	Chr5	6855992	T-C	HET	INTERGENIC
SBS	Chr5	6982876	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	11176571	C-G	HET	INTERGENIC
SBS	Chr8	14128136	A-C	HET	INTERGENIC
SBS	Chr9	11487990	C-A	HOMO	INTRON
SBS	Chr9	4957505	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09250
SBS	Chr9	6735634	G-C	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	324631	324672	41
Deletion	Chr3	5682104	5682107	3
Deletion	Chr5	6803344	7023867	220523	32
Deletion	Chr8	10279192	10279193	1
Deletion	Chr2	11121659	11121660	1
Deletion	Chr2	13583803	13583804	1	LOC_Os02g22800
Deletion	Chr5	13620533	13620556	23
Deletion	Chr11	14294766	14294767	1
Deletion	Chr11	17382001	17555000	173000	29
Deletion	Chr11	17751001	17765000	14000	2
Deletion	Chr11	18296307	18296311	4	LOC_Os11g31340
Deletion	Chr3	19525489	19525495	6
Deletion	Chr1	19689910	19689914	4
Deletion	Chr5	20239916	20239918	2
Deletion	Chr10	21703714	21703715	1
Deletion	Chr10	21968746	21968753	7
Deletion	Chr11	22025981	22025984	3	LOC_Os11g37300
Deletion	Chr2	30216881	30216882	1
Deletion	Chr1	32304426	32304437	11
Deletion	Chr4	32683003	32683010	7

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	42943249	42943252	4
Insertion	Chr12	19503149	19503150	2
Insertion	Chr8	17814155	17814155	1
Insertion	Chr9	21772465	21772465	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7532895	28147720

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	6241105	Chr3	31257958	LOC_Os03g54980
Translocation	Chr9	8108906	Chr2	17586901
Translocation	Chr11	11898843	Chr3	10900074

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