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Mutant Information

Mutant Name	FN747-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN747-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15043653	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27000
SBS	Chr1	18933940	G-A	HET	INTRON
SBS	Chr1	20631203	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	35731286	C-T	HOMO	INTERGENIC
SBS	Chr1	5917413	G-A	HET	INTERGENIC
SBS	Chr10	12300840	C-T	HET	INTERGENIC
SBS	Chr10	19502870	C-A	HET	INTERGENIC
SBS	Chr10	4603621	A-G	HET	INTERGENIC
SBS	Chr10	4638005	G-T	HET	INTERGENIC
SBS	Chr11	10796924	A-T	HET	INTERGENIC
SBS	Chr11	11893442	G-A	HET	INTRON
SBS	Chr12	14762811	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	2306675	A-T	HET	SPLICE_SITE_REGION
SBS	Chr12	23267005	G-A	HET	INTRON
SBS	Chr2	17098381	A-G	HOMO	INTERGENIC
SBS	Chr2	24036454	G-A	HOMO	INTRON
SBS	Chr2	30630972	G-A	HOMO	INTERGENIC
SBS	Chr3	17648050	C-T	HET	INTERGENIC
SBS	Chr3	28737210	G-A	HOMO	INTERGENIC
SBS	Chr3	29219443	G-T	HET	INTERGENIC
SBS	Chr3	33872152	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g59510
SBS	Chr3	7195866	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	14395523	T-C	HET	INTERGENIC
SBS	Chr5	20896796	G-A	HET	INTRON
SBS	Chr5	23964837	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	13451574	C-T	HET	INTRON
SBS	Chr6	19754419	A-G	HET	INTERGENIC
SBS	Chr6	2622009	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05780
SBS	Chr6	5643951	G-A	HET	INTERGENIC
SBS	Chr7	21565052	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36060
SBS	Chr8	12761084	C-A	HET	INTERGENIC
SBS	Chr8	14007570	A-T	HET	INTERGENIC
SBS	Chr8	9009960	G-A	HET	INTERGENIC
SBS	Chr9	351587	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01480

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2947384	2947385	1
Deletion	Chr2	2961726	2961735	9	LOC_Os02g05950
Deletion	Chr11	3123681	3123685	4
Deletion	Chr12	3540001	3555000	15000	3
Deletion	Chr12	4604616	4604622	6
Deletion	Chr10	5448000	5448027	27	LOC_Os10g10030
Deletion	Chr8	6512817	6512822	5
Deletion	Chr10	6814663	6814667	4
Deletion	Chr8	8238915	8238931	16
Deletion	Chr11	8996797	8996798	1
Deletion	Chr2	11469482	11469493	11
Deletion	Chr12	11729014	11735077	6063	LOC_Os12g20150
Deletion	Chr2	15788095	15788096	1
Deletion	Chr3	16410504	16410513	9
Deletion	Chr5	17377734	17377777	43
Deletion	Chr6	18121443	18121444	1
Deletion	Chr7	19431321	19431332	11
Deletion	Chr8	20887098	20887099	1
Deletion	Chr1	23071552	23071570	18
Deletion	Chr7	23743000	23743005	5
Deletion	Chr3	25355963	25355965	2	LOC_Os03g44910
Deletion	Chr6	26827552	26827555	3
Deletion	Chr6	27110660	27115006	4346	LOC_Os06g44860
Deletion	Chr2	27419786	27419797	11	LOC_Os02g45170
Deletion	Chr4	28304272	28304277	5
Deletion	Chr4	34625766	34655665	29899	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19331298	19331299	2
Insertion	Chr1	30338249	30338249	1
Insertion	Chr12	20049473	20049474	2
Insertion	Chr5	127772	127775	4
Insertion	Chr5	20428418	20428418	1
Insertion	Chr8	1209775	1209784	10

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11080603	11207705
Inversion	Chr8	13290677	14601578	LOC_Os08g24190
Inversion	Chr8	13290822	14601585	LOC_Os08g24190
Inversion	Chr12	14313174	17067164	LOC_Os12g24920
Inversion	Chr12	15729143	16722226	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5829886	Chr1	11618352	LOC_Os01g20840
Translocation	Chr7	15760090	Chr4	3855204	2
Translocation	Chr12	21494739	Chr11	17511104	LOC_Os12g35360
Translocation	Chr11	25331002	Chr2	2430960

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