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Mutant Information

Mutant Name	FN748-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN748-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1282608	T-C	HET	INTERGENIC
SBS	Chr1	17213572	T-C	HET	INTRON
SBS	Chr1	17807503	T-C	HET	INTERGENIC
SBS	Chr1	19743516	C-T	HET	INTRON
SBS	Chr1	19836654	A-T	HET	INTRON
SBS	Chr1	32432081	A-G	HET	INTERGENIC
SBS	Chr10	16607758	C-A	HET	INTERGENIC
SBS	Chr10	20333230	C-A	HET	INTERGENIC
SBS	Chr11	12718569	T-A	HOMO	INTRON
SBS	Chr11	5689311	G-A	HOMO	INTRON
SBS	Chr11	6523702	A-T	HOMO	INTERGENIC
SBS	Chr11	9772921	T-A	HOMO	INTERGENIC
SBS	Chr2	11361530	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g19450
SBS	Chr2	14903496	C-A	HET	INTERGENIC
SBS	Chr2	15300758	T-C	HET	INTRON
SBS	Chr2	15300759	G-A	HET	INTRON
SBS	Chr2	15315838	A-G	HET	INTERGENIC
SBS	Chr3	24602812	C-T	HET	INTERGENIC
SBS	Chr3	24739053	C-T	HOMO	INTERGENIC
SBS	Chr3	28013888	C-T	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HET	INTERGENIC
SBS	Chr4	26042885	T-C	HET	INTERGENIC
SBS	Chr4	29313028	A-C	HET	INTRON
SBS	Chr4	30702440	C-A	HET	INTERGENIC
SBS	Chr4	30702442	C-A	HET	INTERGENIC
SBS	Chr5	20002158	T-G	HET	INTERGENIC
SBS	Chr5	26714215	T-C	HOMO	INTERGENIC
SBS	Chr5	9039414	G-T	HET	INTERGENIC
SBS	Chr6	28604747	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr6	5892469	A-T	HOMO	INTERGENIC
SBS	Chr7	18497305	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g31244
SBS	Chr7	8024597	A-T	HET	INTRON
SBS	Chr7	8437178	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5989319	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10900
SBS	Chr9	8211272	A-C	HOMO	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2382165	2382176	11	LOC_Os09g04470
Deletion	Chr6	5932204	5932223	19
Deletion	Chr5	8413892	8413893	1
Deletion	Chr11	11081701	11081704	3
Deletion	Chr2	14061074	14061076	2
Deletion	Chr6	14580001	14647000	67000	13
Deletion	Chr12	18037099	18037100	1
Deletion	Chr3	20472537	20472540	3
Deletion	Chr11	20549734	20549745	11
Deletion	Chr2	22536001	22613000	77000	18
Deletion	Chr2	26473074	26473079	5	LOC_Os02g43840

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1020859	1020859	1
Insertion	Chr1	18415561	18415561	1
Insertion	Chr1	32616163	32616163	1
Insertion	Chr11	19670883	19670884	2
Insertion	Chr2	33912464	33912464	1
Insertion	Chr8	18494296	18494296	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1919998	19701713	LOC_Os11g33310
Inversion	Chr11	12804271	13282837	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5398535	Chr2	17587037	LOC_Os06g10480
Translocation	Chr8	12879639	Chr2	15605491

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