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Mutant Information

Mutant Name	FN750-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN750-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	12003327	A-G	HOMO	INTERGENIC
SBS	Chr10	18234066	G-A	HOMO	INTRON
SBS	Chr10	6930656	G-A	HOMO	INTRON
SBS	Chr11	6507392	T-A	HOMO	INTERGENIC
SBS	Chr12	22834241	T-A	HET	INTERGENIC
SBS	Chr2	15286579	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	26500857	G-T	HOMO	INTERGENIC
SBS	Chr2	4036559	A-G	HET	INTRON
SBS	Chr3	14621758	G-A	HOMO	INTERGENIC
SBS	Chr3	17259369	G-T	HET	INTERGENIC
SBS	Chr3	21429428	A-G	HET	INTERGENIC
SBS	Chr3	25577455	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	10359603	G-A	HET	INTERGENIC
SBS	Chr5	20625226	G-A	HET	INTRON
SBS	Chr5	21234481	T-C	HET	INTERGENIC
SBS	Chr5	27252871	T-A	HOMO	INTERGENIC
SBS	Chr5	27252872	T-A	HOMO	INTERGENIC
SBS	Chr5	27252873	C-A	HOMO	INTERGENIC
SBS	Chr6	24798351	T-C	HOMO	INTRON
SBS	Chr6	30210525	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49900
SBS	Chr7	21064372	T-C	HOMO	INTERGENIC
SBS	Chr7	2185218	G-C	HOMO	INTERGENIC
SBS	Chr7	2233944	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g05060
SBS	Chr7	27276651	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	29608725	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g49440
SBS	Chr7	3704488	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g07420
SBS	Chr8	2316747	C-T	HET	INTERGENIC
SBS	Chr9	19707435	T-C	HET	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	8339472	8339480	8
Deletion	Chr11	10523161	10523168	7	LOC_Os11g18640
Deletion	Chr4	11039511	11039513	2	LOC_Os04g19760
Deletion	Chr10	18220556	18220562	6
Deletion	Chr5	18371588	18371590	2
Deletion	Chr6	21993432	21993436	4
Deletion	Chr3	26560001	26571000	11000	2
Deletion	Chr4	29034971	29034979	8

No Insertion

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2375635	3533241	LOC_Os11g07090
Inversion	Chr11	3533248	3685426	LOC_Os11g07090
Inversion	Chr11	5766919	5843517
Inversion	Chr6	10562895	10675473	LOC_Os06g18150

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	10214552	Chr6	8086665
Translocation	Chr10	10297810	Chr2	18811369	LOC_Os10g20460
Translocation	Chr10	10297995	Chr2	18811371	LOC_Os10g20460
Translocation	Chr10	11115534	Chr4	30456375
Translocation	Chr7	16175822	Chr2	3401783

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