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Mutant Information

Mutant Name	FN751-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN751-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1881445	G-A	HET	INTERGENIC
SBS	Chr1	5593603	C-T	HOMO	UTR_3_PRIME
SBS	Chr10	12557479	C-T	HOMO	INTERGENIC
SBS	Chr10	15136578	C-T	HET	INTERGENIC
SBS	Chr10	23044567	T-G	HET	INTERGENIC
SBS	Chr10	3575931	G-C	HET	INTERGENIC
SBS	Chr11	13326191	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	13176929	C-T	HET	INTERGENIC
SBS	Chr12	21186410	T-A	HET	INTERGENIC
SBS	Chr2	12886235	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g21680
SBS	Chr2	27913978	A-C	HOMO	INTRON
SBS	Chr2	9573138	A-G	HET	INTERGENIC
SBS	Chr3	29847884	A-G	HOMO	INTERGENIC
SBS	Chr3	628677	G-A	HET	INTERGENIC
SBS	Chr3	628679	G-A	HET	INTERGENIC
SBS	Chr4	10003955	C-T	HET	INTERGENIC
SBS	Chr4	20175754	T-G	HET	INTERGENIC
SBS	Chr4	20570938	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g33980
SBS	Chr4	2884068	T-C	HET	INTERGENIC
SBS	Chr4	2884182	A-G	HET	INTERGENIC
SBS	Chr4	3081352	G-C	HET	INTERGENIC
SBS	Chr4	3291499	A-G	HET	INTRON
SBS	Chr5	11048269	A-T	HET	INTERGENIC
SBS	Chr5	20259236	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	23757604	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40440
SBS	Chr6	13740531	A-G	HOMO	INTERGENIC
SBS	Chr6	15121095	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25880
SBS	Chr6	17773913	T-C	HET	INTRON
SBS	Chr7	22150071	G-T	HET	INTERGENIC
SBS	Chr7	22150072	G-T	HET	INTERGENIC
SBS	Chr8	15084559	A-T	HOMO	INTERGENIC
SBS	Chr8	27369671	C-G	HOMO	INTRON
SBS	Chr9	11864800	G-A	HOMO	INTRON
SBS	Chr9	8615368	T-G	HOMO	INTRON

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	6491681	6491682	1
Deletion	Chr12	8120121	8120126	5	LOC_Os12g14260
Deletion	Chr7	18611730	18611731	1	LOC_Os07g31420
Deletion	Chr2	19513539	19513545	6	LOC_Os02g32860
Deletion	Chr4	22048118	22048120	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	5167946	5167947	2
Insertion	Chr6	20611402	20611403	2
Insertion	Chr6	575571	575572	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8134302	8392133
Inversion	Chr11	10814852	10816458	LOC_Os11g18980
Inversion	Chr2	22030258	22528744	LOC_Os02g36470
Inversion	Chr1	22166460	22396559	2
Inversion	Chr2	22528752	30427749	LOC_Os02g49770

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	7364213	Chr1	22167474	LOC_Os01g39380
Translocation	Chr5	7364223	Chr1	22166813	LOC_Os01g39380
Translocation	Chr11	7874187	Chr1	27872078
Translocation	Chr5	11191552	Chr2	30426493	LOC_Os05g19270
Translocation	Chr5	20408123	Chr2	18029417
Translocation	Chr7	22069284	Chr6	25276920	LOC_Os07g36830
Translocation	Chr12	24683709	Chr2	5772737
Translocation	Chr6	28071057	Chr1	22168539	LOC_Os01g39380
Translocation	Chr6	28074491	Chr1	22396573	LOC_Os01g39710

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