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Mutant Information

Mutant Name	FN752-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN752-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10040505	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g17460
SBS	Chr1	10040513	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g17460
SBS	Chr1	30289698	T-G	HET	INTERGENIC
SBS	Chr1	40098329	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g69020
SBS	Chr1	42099991	C-A	HOMO	INTERGENIC
SBS	Chr1	43140227	A-G	HOMO	INTERGENIC
SBS	Chr10	19093685	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g35710
SBS	Chr11	25014264	C-T	HET	INTERGENIC
SBS	Chr11	8937944	G-A	HOMO	INTERGENIC
SBS	Chr12	16229522	C-T	HET	INTERGENIC
SBS	Chr12	18345428	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30540
SBS	Chr12	22556074	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	22916999	G-A	HET	INTERGENIC
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	27075907	T-C	HET	INTERGENIC
SBS	Chr4	10906164	C-T	HET	INTRON
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	7279312	G-A	HOMO	INTRON
SBS	Chr5	6810327	T-C	HET	INTERGENIC
SBS	Chr5	6810330	T-A	HET	INTERGENIC
SBS	Chr5	7340023	A-C	HET	INTERGENIC
SBS	Chr6	21396610	T-G	HET	INTERGENIC
SBS	Chr6	29862591	C-T	HOMO	INTERGENIC
SBS	Chr7	8339803	C-T	HET	INTERGENIC
SBS	Chr8	24997322	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	4586819	4586822	3
Deletion	Chr10	8285992	8285995	3
Deletion	Chr5	8576875	8576876	1
Deletion	Chr2	9279772	9279778	6
Deletion	Chr10	9397455	9397479	24
Deletion	Chr8	10119448	10119449	1
Deletion	Chr6	10540132	10540143	11
Deletion	Chr4	12634847	12634851	4
Deletion	Chr5	14564708	14564709	1
Deletion	Chr6	14773564	14773565	1	LOC_Os06g25250
Deletion	Chr1	15266795	15266801	6
Deletion	Chr3	16201748	16201749	1
Deletion	Chr3	23939809	23939811	2
Deletion	Chr6	24076305	24076311	6
Deletion	Chr12	24136900	24136901	1
Deletion	Chr3	24553141	24553146	5
Deletion	Chr11	25475001	25587000	112000	18
Deletion	Chr3	26994242	26994253	11
Deletion	Chr2	28713532	28713543	11
Deletion	Chr4	31454008	31454011	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	8139732	8139733	2
Insertion	Chr4	30118980	30118981	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25475164	26772107	LOC_Os11g42300
Inversion	Chr11	25587343	26772105

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	8241248	Chr3	20197471	LOC_Os04g14680
Translocation	Chr6	8929365	Chr3	6177643	LOC_Os06g15740
Translocation	Chr5	13766897	Chr4	9679343
Translocation	Chr12	13920481	Chr11	28172833	2
Translocation	Chr5	16961477	Chr3	4463813
Translocation	Chr11	21628191	Chr1	40513247

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