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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5861971	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g10990
SBS	Chr1	5904841	C-A	HET	INTRON
SBS	Chr1	23498957	C-A	HET	INTRON
SBS	Chr2	25540917	C-T	HOMO	INTERGENIC
SBS	Chr3	16146175	C-T	HET	INTERGENIC
SBS	Chr3	21201462	G-T	HOMO	INTERGENIC
SBS	Chr3	28984926	A-G	HOMO	INTERGENIC
SBS	Chr4	12634430	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22320
SBS	Chr4	13593744	C-A	HOMO	INTERGENIC
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	28580209	G-A	HET	INTERGENIC
SBS	Chr4	34773312	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58450
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	4722171	T-A	HET	INTERGENIC
SBS	Chr5	7165376	A-T	HET	INTRON
SBS	Chr6	4158956	T-C	HET	INTERGENIC
SBS	Chr6	13665621	C-T	HET	INTERGENIC
SBS	Chr7	153340	G-A	HET	INTERGENIC
SBS	Chr7	10092053	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17160
SBS	Chr7	13013367	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23070
SBS	Chr7	16179008	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27730
SBS	Chr8	542779	G-A	HET	INTERGENIC
SBS	Chr8	7642844	A-G	HOMO	INTERGENIC
SBS	Chr8	22613818	T-C	HOMO	INTERGENIC
SBS	Chr8	23577137	A-G	HOMO	INTRON
SBS	Chr9	6179294	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	9717118	C-T	HET	INTERGENIC
SBS	Chr9	14090251	G-A	HET	INTERGENIC
SBS	Chr9	21553825	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g37310
SBS	Chr10	9316889	G-C	HET	INTERGENIC
SBS	Chr10	15033310	C-A	HOMO	INTERGENIC
SBS	Chr10	17451797	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33250
SBS	Chr11	6277561	C-T	HET	INTERGENIC
SBS	Chr11	11448769	A-G	HET	INTERGENIC
SBS	Chr12	25172760	A-T	HET	INTERGENIC
SBS	Chr12	25538981	C-A	HET	SYNONYMOUS_CODING

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2184012	2184013	1
Deletion	Chr9	3852373	3852385	12
Deletion	Chr5	5495001	5555000	60000	8
Deletion	Chr4	6695116	6695123	7
Deletion	Chr2	6882041	6882059	18	LOC_Os02g12980
Deletion	Chr2	7004524	7004544	20
Deletion	Chr1	7244354	7244355	1
Deletion	Chr10	8698506	8698510	4
Deletion	Chr7	10093001	10140000	47000	6
Deletion	Chr6	12082660	12082662	2	LOC_Os06g20920
Deletion	Chr4	12634734	12634741	7
Deletion	Chr1	13622575	13622581	6
Deletion	Chr6	14723302	14723317	15
Deletion	Chr10	18094826	18094827	1
Deletion	Chr5	20364542	20364562	20
Deletion	Chr10	22652636	22652637	1	LOC_Os10g42110
Deletion	Chr10	22844975	22845003	28
Deletion	Chr11	22938450	22938465	15
Deletion	Chr12	25114001	25169000	55000	6
Deletion	Chr2	25212280	25212358	78
Deletion	Chr7	25410263	25410266	3	LOC_Os07g42440
Deletion	Chr3	35917472	35917484	12
Deletion	Chr1	40178547	40178562	15	LOC_Os01g69120

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2329880	2329881	2
Insertion	Chr1	5726034	5726035	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1532791	2152604	LOC_Os08g03300
Inversion	Chr8	8352011	8975028
Inversion	Chr8	8352033	8975021
Inversion	Chr7	8597714	10093460	LOC_Os07g14990
Inversion	Chr7	10790798	10926322	LOC_Os07g18200
Inversion	Chr7	10920496	10926327

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1532808	Chr1	2975375	2
Translocation	Chr8	2039401	Chr1	2975388	LOC_Os01g06270
Translocation	Chr10	22697606	Chr6	4198232
Translocation	Chr10	22699236	Chr6	14677084	LOC_Os10g42196

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