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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9707213	G-T	HET	INTRON
SBS	Chr1	22473862	T-C	HET	UTR_3_PRIME
SBS	Chr1	39194785	C-T	HET	INTERGENIC
SBS	Chr1	42767777	A-C	HOMO	INTERGENIC
SBS	Chr2	13610472	G-A	HET	INTERGENIC
SBS	Chr2	14181964	G-A	HET	INTERGENIC
SBS	Chr2	17208586	T-G	HET	INTERGENIC
SBS	Chr2	29497971	G-A	HET	INTERGENIC
SBS	Chr3	15080411	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g26380
SBS	Chr3	19097989	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g33400
SBS	Chr4	12533306	G-C	HET	INTERGENIC
SBS	Chr4	15258737	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26160
SBS	Chr5	14500998	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25060
SBS	Chr5	15366083	C-T	HET	INTRON
SBS	Chr5	19262218	T-G	HET	INTRON
SBS	Chr5	23799208	C-T	HET	INTRON
SBS	Chr7	173274	T-G	HET	INTERGENIC
SBS	Chr7	8638678	A-G	HET	INTERGENIC
SBS	Chr7	9201009	T-G	HET	INTERGENIC
SBS	Chr7	11617090	C-T	HET	INTERGENIC
SBS	Chr7	24399436	C-T	HET	INTRON
SBS	Chr8	2576489	C-G	HET	INTERGENIC
SBS	Chr9	1606559	A-T	HET	INTERGENIC
SBS	Chr9	2879465	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06150
SBS	Chr9	11977751	G-A	HET	UTR_3_PRIME
SBS	Chr9	13212553	C-T	HET	INTERGENIC
SBS	Chr10	9765241	G-A	HOMO	INTERGENIC
SBS	Chr10	12924228	A-G	HET	SYNONYMOUS_CODING
SBS	Chr11	2350784	G-T	HET	INTERGENIC
SBS	Chr11	6251849	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g11290
SBS	Chr11	12724547	G-C	HET	INTERGENIC
SBS	Chr11	22608758	A-G	HET	INTERGENIC
SBS	Chr12	377180	T-C	HET	INTRON
SBS	Chr12	21887347	C-G	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2711685	2711687	2
Deletion	Chr6	3574791	3574793	2
Deletion	Chr12	4229748	4229749	1
Deletion	Chr6	5732846	5732850	4	LOC_Os06g10970
Deletion	Chr4	6528438	6528459	21
Deletion	Chr9	7472473	7472548	75
Deletion	Chr1	10808907	10808908	1
Deletion	Chr5	12074056	12074060	4
Deletion	Chr10	12545001	12663000	118000	20
Deletion	Chr11	14224097	14224104	7	LOC_Os11g24980
Deletion	Chr1	14480258	14480267	9
Deletion	Chr1	15176174	15176183	9
Deletion	Chr2	17841456	17841458	2	LOC_Os02g30030
Deletion	Chr12	18804445	18804447	2
Deletion	Chr2	19820358	19820366	8
Deletion	Chr3	21067983	21067999	16
Deletion	Chr3	22003256	22003268	12
Deletion	Chr3	23613828	23613843	15
Deletion	Chr5	23795454	23795456	2
Deletion	Chr8	27156353	27156371	18
Deletion	Chr8	27663722	27663784	62
Deletion	Chr5	27977435	27977437	2
Deletion	Chr2	28355196	28356197	1001	LOC_Os02g46510
Deletion	Chr2	30741076	30741077	1
Deletion	Chr1	32042630	32042631	1
Deletion	Chr2	33185688	33187437	1749
Deletion	Chr1	38322409	38322415	6
Deletion	Chr1	42478357	42478516	159

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	25055851	25055851	1
Insertion	Chr5	21200975	21200976	2
Insertion	Chr2	18588040	18588050	11
Insertion	Chr2	19427799	19427804	6
Insertion	Chr2	16468454	16468457	4	LOC_Os02g27810
Insertion	Chr7	28354245	28354246	2
Insertion	Chr7	16456453	16456453	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1031958	1370352	LOC_Os10g03240

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1030941	Chr4	16124871
Translocation	Chr5	22977252	Chr2	28355198	LOC_Os05g39180

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