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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12165144	T-C	HET	INTERGENIC
SBS	Chr1	23118999	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g40870
SBS	Chr1	27519110	A-C	HOMO	INTERGENIC
SBS	Chr10	10510231	T-A	HET	INTERGENIC
SBS	Chr10	12407415	C-T	HOMO	INTERGENIC
SBS	Chr10	5875812	C-G	HOMO	INTERGENIC
SBS	Chr11	11179822	G-A	HOMO	INTERGENIC
SBS	Chr11	18616749	C-T	HET	INTERGENIC
SBS	Chr11	20263978	G-C	HET	INTERGENIC
SBS	Chr11	23858455	G-C	HET	INTRON
SBS	Chr12	10998902	T-C	HOMO	UTR_3_PRIME
SBS	Chr12	22628590	T-A	HET	INTERGENIC
SBS	Chr2	16686961	G-A	HOMO	INTERGENIC
SBS	Chr2	2106300	G-T	HET	INTERGENIC
SBS	Chr2	26392004	C-T	HET	INTERGENIC
SBS	Chr2	29864978	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g48790
SBS	Chr3	31077730	C-T	HET	UTR_3_PRIME
SBS	Chr3	31077731	G-T	HET	UTR_3_PRIME
SBS	Chr3	31077732	A-T	HET	UTR_3_PRIME
SBS	Chr4	13573227	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23739
SBS	Chr4	13977688	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g24370
SBS	Chr4	27742565	T-G	HOMO	INTERGENIC
SBS	Chr4	3026352	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05880
SBS	Chr4	33688783	T-C	HET	INTERGENIC
SBS	Chr4	33688784	C-T	HET	INTERGENIC
SBS	Chr4	5519135	A-T	HET	INTRON
SBS	Chr4	5519138	A-T	HET	INTRON
SBS	Chr5	12302216	G-A	HET	INTRON
SBS	Chr6	17083918	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	28049251	A-G	HET	INTRON
SBS	Chr7	11640255	G-A	HOMO	INTERGENIC
SBS	Chr7	1528106	A-G	HET	INTERGENIC
SBS	Chr7	18226425	G-A	HOMO	INTRON
SBS	Chr7	23951939	G-C	HET	INTERGENIC
SBS	Chr8	22016696	T-A	HOMO	INTRON
SBS	Chr8	27354742	C-T	HET	INTERGENIC
SBS	Chr9	18595920	C-T	HET	INTERGENIC
SBS	Chr9	21237987	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	556953	556956	3
Deletion	Chr6	1493803	1493827	24
Deletion	Chr1	2649533	2649581	48
Deletion	Chr9	3236001	3285000	49000	9
Deletion	Chr9	3287001	3328000	41000	6
Deletion	Chr8	5072041	5072042	1
Deletion	Chr11	5679205	5679211	6
Deletion	Chr2	10756423	10756427	4
Deletion	Chr5	11402625	11402631	6
Deletion	Chr4	13573205	13573215	10	LOC_Os04g23739
Deletion	Chr4	16387033	16387037	4
Deletion	Chr4	17334294	17334296	2
Deletion	Chr7	20974135	20974136	1
Deletion	Chr6	21184356	21184372	16
Deletion	Chr12	23473973	23473976	3
Deletion	Chr5	23596554	23596563	9
Deletion	Chr12	24953500	24953501	1
Deletion	Chr11	26328377	26328379	2
Deletion	Chr8	27294064	27294070	6
Deletion	Chr1	28433219	28433220	1	LOC_Os01g49440
Deletion	Chr2	29011645	29011655	10
Deletion	Chr5	29545083	29545089	6
Deletion	Chr2	29866565	29866573	8	LOC_Os02g48790
Deletion	Chr3	30129181	30129383	202
Deletion	Chr2	30520234	30520238	4
Deletion	Chr3	32254326	32261250	6924	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25252911	25252911	1
Insertion	Chr12	23551114	23551115	2
Insertion	Chr4	7291290	7291290	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3236054	4304093
Inversion	Chr9	4304140	5005690
Inversion	Chr4	12273504	14133482	2
Inversion	Chr4	12309363	14133483	2
Inversion	Chr7	22670341	25462675

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	3165873	Chr1	24455555
Translocation	Chr2	3165879	Chr1	24386184	LOC_Os01g42850
Translocation	Chr7	23893139	Chr3	18885718	LOC_Os03g33012
Translocation	Chr7	23893149	Chr3	17781360	LOC_Os03g31230

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