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Mutant Information

Mutant Name	FN783-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN783-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11404388	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g20090
SBS	Chr11	16814000	T-C	HET	INTERGENIC
SBS	Chr11	26565023	A-T	HET	INTERGENIC
SBS	Chr3	18885401	T-A	HET	INTRON
SBS	Chr3	19090294	C-T	HET	INTERGENIC
SBS	Chr3	19098914	C-T	HET	INTERGENIC
SBS	Chr4	17680358	G-A	HET	INTERGENIC
SBS	Chr4	25712756	C-T	HET	INTERGENIC
SBS	Chr5	11322773	A-G	HOMO	INTRON
SBS	Chr5	22541625	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g38430
SBS	Chr6	14632118	G-A	HOMO	INTERGENIC
SBS	Chr7	4475176	C-T	HOMO	INTERGENIC
SBS	Chr7	9371602	C-T	HET	INTRON
SBS	Chr8	25330319	G-T	HET	INTERGENIC
SBS	Chr8	26745305	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g42370

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1363759	1363837	78
Deletion	Chr9	2973176	2973177	1	LOC_Os09g06330
Deletion	Chr9	6770518	6770537	19
Deletion	Chr11	8659624	8675828	16204	LOC_Os11g15320
Deletion	Chr11	8675820	8698648	22828	3
Deletion	Chr11	8875494	8875496	2
Deletion	Chr6	10966772	10966774	2
Deletion	Chr10	12544159	12544160	1
Deletion	Chr1	14362989	14363004	15
Deletion	Chr11	15910006	15910011	5
Deletion	Chr2	17322767	17322777	10
Deletion	Chr1	17874108	17874113	5
Deletion	Chr8	18182727	18182729	2
Deletion	Chr5	22541617	22541619	2	LOC_Os05g38430
Deletion	Chr6	23170007	23170009	2	LOC_Os06g39020
Deletion	Chr1	24050895	24050914	19	LOC_Os01g42350
Deletion	Chr6	30437880	30437913	33

No Insertion

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	18496010	19052445	LOC_Os08g30870
Inversion	Chr8	18496021	19052452	LOC_Os08g30870
Inversion	Chr1	19823071	22330331

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	8158638	Chr2	22707937	LOC_Os04g14560