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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17890413	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32630
SBS	Chr1	23284789	G-A	HET	INTERGENIC
SBS	Chr10	18706272	C-T	HOMO	INTERGENIC
SBS	Chr10	6044991	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g10920
SBS	Chr10	9006180	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g17800
SBS	Chr11	16188216	G-A	HOMO	INTERGENIC
SBS	Chr11	17766277	A-T	HET	INTERGENIC
SBS	Chr12	15228768	G-A	HOMO	INTERGENIC
SBS	Chr12	23768261	T-A	HET	INTERGENIC
SBS	Chr2	24935516	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g41580
SBS	Chr2	4709345	T-C	HET	INTRON
SBS	Chr3	3011316	A-C	HET	INTERGENIC
SBS	Chr4	14155898	G-A	HOMO	INTERGENIC
SBS	Chr4	26380002	A-G	HOMO	UTR_3_PRIME
SBS	Chr4	34246778	G-T	HET	INTRON
SBS	Chr4	7571041	G-A	HET	INTERGENIC
SBS	Chr4	9081809	G-C	HOMO	INTRON
SBS	Chr5	22679964	T-G	HET	INTERGENIC
SBS	Chr5	28594649	G-A	HET	INTERGENIC
SBS	Chr5	4082372	C-T	HOMO	INTERGENIC
SBS	Chr6	1039101	G-A	HET	INTERGENIC
SBS	Chr6	27388654	T-A	HET	INTRON
SBS	Chr7	19761902	A-G	HOMO	INTERGENIC
SBS	Chr9	8510103	G-T	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2083506	2083513	7
Deletion	Chr7	7109135	7109137	2	LOC_Os07g12470
Deletion	Chr5	7299001	7347000	48000	10
Deletion	Chr5	7361001	7886000	525000	83
Deletion	Chr1	8024395	8027270	2875	LOC_Os01g14320
Deletion	Chr1	8229334	8230865	1531	LOC_Os01g14700
Deletion	Chr5	13383985	13383987	2
Deletion	Chr1	17992981	18366656	373675	51
Deletion	Chr5	21964446	21964448	2	LOC_Os05g37520
Deletion	Chr1	33797439	33797440	1
Deletion	Chr4	35497411	35497412	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23798371	23798372	2
Insertion	Chr10	13789674	13789674	1
Insertion	Chr7	8528049	8528049	1
Insertion	Chr9	20169632	20169643	12

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17215965	18365777	2
Inversion	Chr1	17993027	18405877	LOC_Os01g32780
Inversion	Chr1	18366173	20295551	LOC_Os01g33350

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	6845738	Chr6	22827530

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