Search Nipponbare

Mutant Information

Mutant Name	FN791-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN791-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17039902	C-A	HET	INTRON
SBS	Chr1	26328581	G-A	HOMO	INTERGENIC
SBS	Chr1	29344350	G-C	HOMO	INTERGENIC
SBS	Chr1	3393632	G-A	HOMO	INTERGENIC
SBS	Chr1	39892799	G-A	HOMO	INTERGENIC
SBS	Chr1	587755	A-T	HET	UTR_5_PRIME
SBS	Chr10	21903614	G-T	HET	INTERGENIC
SBS	Chr10	4390154	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08120
SBS	Chr12	14011849	T-A	HET	INTERGENIC
SBS	Chr12	768579	A-T	HET	INTERGENIC
SBS	Chr12	768580	A-T	HET	INTERGENIC
SBS	Chr2	32972612	G-A	HET	INTERGENIC
SBS	Chr2	33031181	G-A	HOMO	INTERGENIC
SBS	Chr4	16982770	C-T	HOMO	INTERGENIC
SBS	Chr4	30831750	G-A	HET	INTERGENIC
SBS	Chr5	12881415	G-A	HET	INTERGENIC
SBS	Chr5	12881416	A-C	HET	INTERGENIC
SBS	Chr5	14642371	T-A	HET	INTERGENIC
SBS	Chr5	21182393	G-A	HET	INTRON
SBS	Chr5	24448648	A-T	HET	INTERGENIC
SBS	Chr5	6694398	T-C	HET	INTERGENIC
SBS	Chr5	951238	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g02680
SBS	Chr5	951241	G-T	HET	STOP_GAINED	LOC_Os05g02680
SBS	Chr6	29594936	C-T	HOMO	INTRON
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr6	446464	G-C	HOMO	INTRON
SBS	Chr6	644525	C-T	HOMO	INTRON
SBS	Chr7	16788362	T-C	HET	INTRON
SBS	Chr7	19404910	G-T	HOMO	UTR_3_PRIME
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr7	28278051	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g47300
SBS	Chr7	28278052	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g47300
SBS	Chr8	13777220	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	28026373	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	5496117	A-C	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	764405	768522	4117	2
Deletion	Chr7	2781039	2781042	3	LOC_Os07g05770
Deletion	Chr4	4385672	4385678	6
Deletion	Chr7	7051152	7051153	1
Deletion	Chr10	8006794	8006799	5
Deletion	Chr2	10333506	10333530	24	LOC_Os02g17850
Deletion	Chr1	12184186	12184200	14
Deletion	Chr7	13471192	13471200	8	LOC_Os07g23850
Deletion	Chr6	17140649	17140656	7
Deletion	Chr7	18348090	18348096	6	LOC_Os07g30980
Deletion	Chr8	20711104	20711111	7
Deletion	Chr5	22623578	22623607	29
Deletion	Chr11	22901713	22901716	3	LOC_Os11g38630
Deletion	Chr1	25984334	25984336	2
Deletion	Chr7	28193995	28194001	6	LOC_Os07g47160
Deletion	Chr3	31712761	31712762	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	8535827	8535828	2	LOC_Os10g17040
Insertion	Chr11	22223380	22223383	4
Insertion	Chr4	3952441	3952445	5
Insertion	Chr8	13657406	13657407	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11519477	11752959	LOC_Os04g20940
Inversion	Chr4	11519493	11752963	LOC_Os04g20940

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1053644	Chr1	2701864	LOC_Os01g05660

Main menu