Search Results
Mutant Information |
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Mutant Name | FN801-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN801-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 27
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 25447225 | C-T | HOMO | INTERGENIC | |
SBS | Chr1 | 25447226 | C-T | HOMO | INTERGENIC | |
SBS | Chr1 | 37856148 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g65230 |
SBS | Chr1 | 40905818 | C-T | HET | INTRON | |
SBS | Chr2 | 23831939 | C-A | HET | INTRON | |
SBS | Chr2 | 30516291 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 19103486 | T-G | HOMO | INTERGENIC | |
SBS | Chr4 | 7160504 | A-G | HOMO | INTERGENIC | |
SBS | Chr4 | 17676636 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 25233653 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 13652245 | A-T | HOMO | INTERGENIC | |
SBS | Chr7 | 6178248 | C-G | HET | INTRON | |
SBS | Chr7 | 11963868 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 19708422 | G-A | HOMO | INTERGENIC | |
SBS | Chr8 | 13756908 | G-A | HOMO | INTRON | |
SBS | Chr8 | 16611104 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g27190 |
SBS | Chr9 | 6755846 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 2039964 | A-C | HET | INTRON | |
SBS | Chr10 | 22658785 | G-C | HOMO | INTERGENIC | |
SBS | Chr10 | 23116182 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g42870 |
SBS | Chr10 | 23116183 | A-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr11 | 19078402 | G-A | HET | INTRON | |
SBS | Chr11 | 21803214 | T-A | HET | INTERGENIC | |
SBS | Chr11 | 21803215 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 22129012 | G-T | HET | INTERGENIC | |
SBS | Chr12 | 1026675 | A-G | HET | INTERGENIC | |
SBS | Chr12 | 2704871 | G-A | HET | INTERGENIC |
Deletions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 314760 | 314762 | 2 | |
Deletion | Chr2 | 634510 | 634564 | 54 | |
Deletion | Chr1 | 2396490 | 2530808 | 134318 | 22 |
Deletion | Chr8 | 4152475 | 4152476 | 1 | |
Deletion | Chr4 | 5475768 | 5475777 | 9 | |
Deletion | Chr5 | 6715578 | 6715588 | 10 | |
Deletion | Chr4 | 12490823 | 12490833 | 10 | |
Deletion | Chr4 | 14663441 | 14663473 | 32 | |
Deletion | Chr12 | 15844769 | 15844773 | 4 | LOC_Os12g27060 |
Deletion | Chr12 | 16043259 | 16043268 | 9 | |
Deletion | Chr9 | 19395695 | 19395696 | 1 | |
Deletion | Chr4 | 20294237 | 20294270 | 33 | |
Deletion | Chr1 | 20632279 | 20632282 | 3 | |
Deletion | Chr9 | 21080776 | 21080794 | 18 | |
Deletion | Chr10 | 22667168 | 22667233 | 65 | |
Deletion | Chr7 | 22863509 | 22863514 | 5 | |
Deletion | Chr6 | 24003457 | 24003458 | 1 | |
Deletion | Chr2 | 24268171 | 24268175 | 4 | LOC_Os02g40080 |
Deletion | Chr3 | 27104268 | 27104270 | 2 | |
Deletion | Chr7 | 27546927 | 27546930 | 3 | |
Deletion | Chr6 | 28513189 | 28513190 | 1 | |
Deletion | Chr2 | 35514155 | 35514169 | 14 |
Insertions: 6
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
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Inversion | Chr9 | 5358087 | 5554877 | 2 |
Inversion | Chr5 | 25135566 | 25227959 | LOC_Os05g43220 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr11 | 16245455 | Chr1 | 13263535 | |
Translocation | Chr11 | 16245466 | Chr1 | 13276172 | LOC_Os01g23610 |
Translocation | Chr7 | 16854981 | Chr5 | 28068340 | LOC_Os05g48930 |
Translocation | Chr7 | 16857061 | Chr5 | 28068340 | LOC_Os05g48930 |