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Mutant Information

Mutant Name	FN801-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN801-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25447225	C-T	HOMO	INTERGENIC
SBS	Chr1	25447226	C-T	HOMO	INTERGENIC
SBS	Chr1	37856148	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g65230
SBS	Chr1	40905818	C-T	HET	INTRON
SBS	Chr10	2039964	A-C	HET	INTRON
SBS	Chr10	22658785	G-C	HOMO	INTERGENIC
SBS	Chr10	23116182	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g42870
SBS	Chr10	23116183	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	19078402	G-A	HET	INTRON
SBS	Chr11	21803214	T-A	HET	INTERGENIC
SBS	Chr11	21803215	C-A	HET	INTERGENIC
SBS	Chr11	22129012	G-T	HET	INTERGENIC
SBS	Chr12	1026675	A-G	HET	INTERGENIC
SBS	Chr12	2704871	G-A	HET	INTERGENIC
SBS	Chr2	23831939	C-A	HET	INTRON
SBS	Chr2	30516291	G-A	HET	INTERGENIC
SBS	Chr3	19103486	T-G	HOMO	INTERGENIC
SBS	Chr4	17676636	G-A	HOMO	INTERGENIC
SBS	Chr4	7160504	A-G	HOMO	INTERGENIC
SBS	Chr5	25233653	C-T	HET	INTERGENIC
SBS	Chr6	13652245	A-T	HOMO	INTERGENIC
SBS	Chr7	11963868	G-T	HET	INTERGENIC
SBS	Chr7	19708422	G-A	HOMO	INTERGENIC
SBS	Chr7	6178248	C-G	HET	INTRON
SBS	Chr8	13756908	G-A	HOMO	INTRON
SBS	Chr8	16611104	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g27190
SBS	Chr9	6755846	T-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	314760	314762	2
Deletion	Chr2	634510	634564	54
Deletion	Chr1	2396490	2530808	134318	22
Deletion	Chr8	4152475	4152476	1
Deletion	Chr4	5475768	5475777	9
Deletion	Chr5	6715578	6715588	10
Deletion	Chr4	12490823	12490833	10
Deletion	Chr4	14663441	14663473	32
Deletion	Chr12	15844769	15844773	4	LOC_Os12g27060
Deletion	Chr12	16043259	16043268	9
Deletion	Chr9	19395695	19395696	1
Deletion	Chr4	20294237	20294270	33
Deletion	Chr1	20632279	20632282	3
Deletion	Chr9	21080776	21080794	18
Deletion	Chr10	22667168	22667233	65
Deletion	Chr7	22863509	22863514	5
Deletion	Chr6	24003457	24003458	1
Deletion	Chr2	24268171	24268175	4	LOC_Os02g40080
Deletion	Chr3	27104268	27104270	2
Deletion	Chr7	27546927	27546930	3
Deletion	Chr6	28513189	28513190	1
Deletion	Chr2	35514155	35514169	14

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11739696	11739699	4
Insertion	Chr1	38794092	38794092	1
Insertion	Chr2	5636488	5636488	1
Insertion	Chr3	15198549	15198549	1
Insertion	Chr7	11202650	11202652	3
Insertion	Chr9	15768732	15768732	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5358087	5554877	2
Inversion	Chr5	25135566	25227959	LOC_Os05g43220

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16245455	Chr1	13263535
Translocation	Chr11	16245466	Chr1	13276172	LOC_Os01g23610
Translocation	Chr7	16854981	Chr5	28068340	LOC_Os05g48930
Translocation	Chr7	16857061	Chr5	28068340	LOC_Os05g48930

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