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Mutant Information

Mutant Name	FN814-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN814-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7647543	G-A	HET	INTERGENIC
SBS	Chr10	723175	C-T	HET	INTERGENIC
SBS	Chr10	9159363	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18070
SBS	Chr12	19067066	G-A	HET	INTRON
SBS	Chr12	19067068	G-A	HET	INTRON
SBS	Chr12	22401211	C-T	HET	INTERGENIC
SBS	Chr12	26014213	T-G	HOMO	INTERGENIC
SBS	Chr12	3134731	A-G	HET	INTERGENIC
SBS	Chr12	4423830	G-A	HET	INTERGENIC
SBS	Chr12	7274505	G-A	HET	INTERGENIC
SBS	Chr12	9689602	C-A	HET	UTR_3_PRIME
SBS	Chr2	12290743	T-G	HOMO	INTERGENIC
SBS	Chr2	4401503	C-T	HET	INTERGENIC
SBS	Chr3	16684988	C-T	HOMO	INTERGENIC
SBS	Chr3	31889959	G-A	HET	INTRON
SBS	Chr4	23231486	T-A	HET	INTRON
SBS	Chr4	2695107	G-T	HET	INTERGENIC
SBS	Chr5	19424678	A-T	HOMO	INTERGENIC
SBS	Chr5	26014544	G-A	HOMO	INTERGENIC
SBS	Chr5	26014545	C-T	HOMO	INTERGENIC
SBS	Chr7	21111849	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35270
SBS	Chr7	24370617	G-A	HET	INTERGENIC
SBS	Chr7	8616193	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g15030
SBS	Chr9	6919438	C-G	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3865467	3867579	2112	2
Deletion	Chr6	4745624	4745625	1
Deletion	Chr1	5492452	5492464	12
Deletion	Chr11	7711107	7711108	1
Deletion	Chr1	8176222	8176223	1	LOC_Os01g14580
Deletion	Chr11	11422264	11422267	3	LOC_Os11g19830
Deletion	Chr4	13194845	13194849	4	LOC_Os04g23200
Deletion	Chr6	13946389	13946393	4
Deletion	Chr11	14227834	14227835	1
Deletion	Chr7	14628132	14628147	15
Deletion	Chr6	15890755	15890756	1
Deletion	Chr11	16259094	16259095	1
Deletion	Chr2	18242001	18282000	40000	4
Deletion	Chr12	21720172	21720173	1
Deletion	Chr1	30948129	30948134	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	10373182	10373183	2
Insertion	Chr11	4888209	4888210	2
Insertion	Chr3	8254837	8254838	2
Insertion	Chr5	20696034	20696034	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8541434	8552953	LOC_Os07g14920
Inversion	Chr7	8552955	8554203
Inversion	Chr12	26666928	26791458
Inversion	Chr3	27717064	29143606	2
Inversion	Chr3	29118966	29173102	2
Inversion	Chr3	29173083	29854030	LOC_Os03g51030
Inversion	Chr3	29854037	30411419

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17939162	Chr3	27717985	LOC_Os03g48610
Translocation	Chr9	17939181	Chr3	27717088	LOC_Os03g48610
Translocation	Chr5	19216366	Chr3	29164502	LOC_Os03g51020
Translocation	Chr5	19216367	Chr3	29143610	LOC_Os03g51000
Translocation	Chr12	26791371	Chr7	17930945

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