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Mutant Information

Mutant Name	FN817-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN817-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3585995	C-T	HET	INTERGENIC
SBS	Chr1	17222742	C-T	HOMO	INTERGENIC
SBS	Chr1	23332079	G-A	HOMO	INTERGENIC
SBS	Chr1	29982846	C-A	HOMO	INTERGENIC
SBS	Chr1	35542847	A-T	HET	INTRON
SBS	Chr2	10497190	T-C	HET	INTERGENIC
SBS	Chr2	10498557	A-G	HET	INTERGENIC
SBS	Chr2	11558695	T-A	HET	INTERGENIC
SBS	Chr2	28299537	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46450
SBS	Chr3	20849919	G-A	HOMO	INTERGENIC
SBS	Chr3	27208968	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47860
SBS	Chr4	13385447	G-A	HOMO	INTRON
SBS	Chr4	17360811	A-T	HOMO	INTERGENIC
SBS	Chr4	17360812	A-T	HOMO	INTERGENIC
SBS	Chr4	17360813	G-T	HOMO	INTERGENIC
SBS	Chr5	11704581	G-A	HET	INTERGENIC
SBS	Chr6	15747639	C-A	HET	INTERGENIC
SBS	Chr6	15747640	T-A	HET	INTERGENIC
SBS	Chr8	1105161	T-C	HOMO	INTERGENIC
SBS	Chr8	9550414	C-T	HET	INTERGENIC
SBS	Chr11	8226100	C-T	HET	SYNONYMOUS_CODING

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1841581	1841589	8
Deletion	Chr12	3370165	3370166	1
Deletion	Chr8	3927193	3927194	1
Deletion	Chr5	4216352	4216353	1	LOC_Os05g07820
Deletion	Chr2	5735358	5735359	1
Deletion	Chr5	7259346	7259347	1
Deletion	Chr12	7752317	7752319	2
Deletion	Chr1	9859926	9859929	3
Deletion	Chr11	10056438	10056448	10
Deletion	Chr3	11873448	11873454	6	LOC_Os03g20930
Deletion	Chr3	12833861	12833869	8
Deletion	Chr3	13062135	13077036	14901	LOC_Os03g22634
Deletion	Chr4	15422496	15422506	10
Deletion	Chr6	15975948	15975949	1
Deletion	Chr5	16118168	16118169	1
Deletion	Chr8	17818068	17818069	1
Deletion	Chr5	17941789	17941796	7	LOC_Os05g30890
Deletion	Chr9	18201217	18201219	2
Deletion	Chr2	21926528	21926543	15
Deletion	Chr2	23184011	23184015	4	LOC_Os02g38350
Deletion	Chr1	26045605	26045606	1	LOC_Os01g45860
Deletion	Chr8	26804669	26827594	22925	LOC_Os08g42450
Deletion	Chr8	26805001	26831000	26000	2
Deletion	Chr3	27201715	27201718	3
Deletion	Chr4	27877052	27877054	2
Deletion	Chr6	28077614	28077615	1
Deletion	Chr4	32577706	32577720	14	LOC_Os04g54790
Deletion	Chr2	33893122	33893123	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	17866036	17866037	2
Insertion	Chr7	25221115	25221116	2
Insertion	Chr6	2241231	2241231	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14964230	15209128	LOC_Os09g25380
Inversion	Chr9	14964260	15209138	LOC_Os09g25380
Inversion	Chr4	16845896	16946083	2
Inversion	Chr4	20450766	20547263	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	961241	Chr4	16845905	LOC_Os04g28460
Translocation	Chr12	978557	Chr4	16946089	2
Translocation	Chr9	9627584	Chr4	11875095	2
Translocation	Chr9	9627808	Chr4	11874964	2
Translocation	Chr4	34717133	Chr3	13062145	2
Translocation	Chr4	34717135	Chr3	13077030	LOC_Os04g58320

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