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Mutant Information

Mutant Name	FN820-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN820-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	16664499	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31780
SBS	Chr10	3977575	A-G	HET	INTERGENIC
SBS	Chr10	6613724	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11920
SBS	Chr12	11949514	C-T	HOMO	INTERGENIC
SBS	Chr12	23985155	C-T	HOMO	INTERGENIC
SBS	Chr2	28821273	G-T	HET	INTRON
SBS	Chr3	21805581	G-A	HET	INTERGENIC
SBS	Chr3	23014406	T-G	HOMO	INTERGENIC
SBS	Chr3	25329885	C-G	HOMO	UTR_5_PRIME
SBS	Chr3	26196602	G-A	HOMO	INTERGENIC
SBS	Chr3	8738290	C-G	HOMO	INTRON
SBS	Chr4	1394658	G-A	HET	INTERGENIC
SBS	Chr4	18110003	A-G	HOMO	INTERGENIC
SBS	Chr4	18110004	G-A	HOMO	INTERGENIC
SBS	Chr4	20356220	T-A	HET	INTERGENIC
SBS	Chr5	14449526	G-A	HET	UTR_3_PRIME
SBS	Chr6	7464069	A-G	HET	INTERGENIC
SBS	Chr7	6217774	A-G	HET	INTERGENIC
SBS	Chr8	28156553	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44830
SBS	Chr9	9236679	G-C	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	13919	13944	25
Deletion	Chr2	2121119	2121120	1
Deletion	Chr10	3930961	3930980	19
Deletion	Chr7	4163902	4163903	1
Deletion	Chr2	5515726	5515736	10	LOC_Os02g10490
Deletion	Chr10	5774318	5774683	365
Deletion	Chr4	8364993	8365006	13	LOC_Os04g14870
Deletion	Chr3	9667624	9667641	17
Deletion	Chr4	10934562	10934563	1
Deletion	Chr6	11509608	11509609	1
Deletion	Chr10	11595239	11595243	4
Deletion	Chr12	15526141	15526144	3
Deletion	Chr1	17134089	17134090	1
Deletion	Chr2	21459153	21459156	3
Deletion	Chr3	27630672	27630684	12
Deletion	Chr3	29292397	29292402	5
Deletion	Chr3	30277702	30277706	4	LOC_Os03g52794
Deletion	Chr1	38445460	38445461	1
Deletion	Chr1	39581677	39581682	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2549378	2549399	22
Insertion	Chr11	14529191	14529194	4
Insertion	Chr11	22168333	22168334	2
Insertion	Chr6	23538526	23538528	3
Insertion	Chr7	4262722	4262722	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16990414	17779648	2
Inversion	Chr8	17085776	17779649	LOC_Os08g29030

No Translocation

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