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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4084447	C-T	HOMO	INTERGENIC
SBS	Chr1	28873275	T-A	HET	INTERGENIC
SBS	Chr1	30413015	T-C	HET	UTR_3_PRIME
SBS	Chr1	30432103	G-A	HET	INTERGENIC
SBS	Chr1	35988905	T-A	HET	INTERGENIC
SBS	Chr3	5219487	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g10250
SBS	Chr3	6136467	G-T	HET	UTR_5_PRIME
SBS	Chr3	35471916	A-C	HET	INTRON
SBS	Chr4	10350048	C-G	HET	INTERGENIC
SBS	Chr4	12644507	G-T	HET	INTERGENIC
SBS	Chr4	31665116	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	31853709	T-C	HET	INTERGENIC
SBS	Chr4	35114636	T-G	HET	INTERGENIC
SBS	Chr5	14329649	T-A	HET	SYNONYMOUS_CODING
SBS	Chr5	22342401	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	11627639	A-T	HET	INTERGENIC
SBS	Chr6	12410621	T-A	HET	INTERGENIC
SBS	Chr6	12410622	T-G	HET	INTERGENIC
SBS	Chr6	12825127	A-C	HET	INTERGENIC
SBS	Chr6	13335360	G-A	HET	INTERGENIC
SBS	Chr6	19575026	G-A	HET	INTERGENIC
SBS	Chr6	23820026	A-C	HET	INTERGENIC
SBS	Chr8	4530503	C-A	HET	INTRON
SBS	Chr8	18870909	C-T	HET	INTERGENIC
SBS	Chr9	10038025	A-G	HET	INTERGENIC
SBS	Chr9	16905094	A-T	HET	INTERGENIC
SBS	Chr10	2214095	A-T	HOMO	INTERGENIC
SBS	Chr10	12232031	C-T	HOMO	INTERGENIC
SBS	Chr10	21482060	G-A	HOMO	INTERGENIC
SBS	Chr10	22364416	C-T	HOMO	INTERGENIC
SBS	Chr11	11255454	C-T	HOMO	INTERGENIC
SBS	Chr11	11255455	A-T	HOMO	INTERGENIC
SBS	Chr11	20091145	G-A	HOMO	INTRON
SBS	Chr12	4965116	C-A	HET	INTERGENIC
SBS	Chr12	13637376	T-C	HET	INTRON
SBS	Chr12	21632667	A-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	441701	1092919	651218	107
Deletion	Chr7	6686829	6686839	10
Deletion	Chr6	9493482	9493494	12	LOC_Os06g16550
Deletion	Chr10	10147001	10243000	96000	18
Deletion	Chr8	10867964	10867966	2
Deletion	Chr10	12232041	12232044	3
Deletion	Chr3	15412410	15412424	14
Deletion	Chr8	18987167	18987178	11
Deletion	Chr12	19891320	19891341	21	LOC_Os12g32920
Deletion	Chr2	20247760	20247772	12
Deletion	Chr8	20747103	20747110	7
Deletion	Chr10	21822850	21822851	1	LOC_Os10g40680
Deletion	Chr3	22738683	22738684	1
Deletion	Chr2	23175841	23175848	7
Deletion	Chr2	24408001	24432000	24000	2
Deletion	Chr4	28603109	28603110	1	LOC_Os04g48070
Deletion	Chr1	29329288	29329295	7
Deletion	Chr4	33403612	33403613	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	3167159	3167160	2
Insertion	Chr11	19595026	19595027	2
Insertion	Chr2	16513963	16513964	2
Insertion	Chr8	9879762	9879763	2
Insertion	Chr9	10403603	10403604	2
Insertion	Chr9	4038041	4038041	1	LOC_Os09g07910

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1112922	1113270	LOC_Os06g03030
Inversion	Chr6	1959279	8363088

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4916904	Chr1	13054397
Translocation	Chr11	22130892	Chr6	15401669

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr6	1112753	1112753	0	LOC_Os06g03030

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