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Mutant Information

Mutant Name	FN837-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN837-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18013954	T-G	HET	UTR_3_PRIME
SBS	Chr1	23648659	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	28566540	A-T	HOMO	INTERGENIC
SBS	Chr1	36580311	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	36580312	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g63120
SBS	Chr1	40685653	T-A	HOMO	INTERGENIC
SBS	Chr1	6952290	G-A	HET	INTERGENIC
SBS	Chr10	20223846	G-T	HET	INTERGENIC
SBS	Chr10	2072352	T-G	HOMO	INTERGENIC
SBS	Chr10	215274	G-A	HOMO	INTERGENIC
SBS	Chr11	27330933	C-T	HOMO	INTERGENIC
SBS	Chr11	3446751	G-A	HET	INTERGENIC
SBS	Chr12	14554936	G-A	HOMO	INTERGENIC
SBS	Chr12	19509480	G-T	HOMO	INTRON
SBS	Chr12	8954890	G-T	HOMO	INTRON
SBS	Chr2	27432863	A-G	HET	INTERGENIC
SBS	Chr3	14681147	G-A	HET	INTRON
SBS	Chr3	25417712	G-A	HOMO	INTRON
SBS	Chr3	29945898	T-C	HET	INTRON
SBS	Chr4	10792584	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	12122074	C-T	HOMO	INTERGENIC
SBS	Chr4	25367743	G-A	HOMO	INTERGENIC
SBS	Chr5	11937331	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20360
SBS	Chr5	29010361	G-A	HOMO	INTRON
SBS	Chr6	18092437	G-T	HET	INTERGENIC
SBS	Chr6	4248135	C-A	HOMO	INTERGENIC
SBS	Chr7	14026266	C-T	HET	INTERGENIC
SBS	Chr7	17213184	C-T	HET	INTERGENIC
SBS	Chr7	19967134	C-T	HET	INTERGENIC
SBS	Chr8	8655409	G-T	HOMO	INTERGENIC
SBS	Chr9	11764175	A-G	HOMO	INTERGENIC
SBS	Chr9	6613034	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	9056079	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15020

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	609741	609742	1
Deletion	Chr11	3874950	3921361	46411	7
Deletion	Chr5	4159756	4159757	1
Deletion	Chr9	5791860	5791861	1
Deletion	Chr2	6624230	6624236	6
Deletion	Chr3	6749035	6749045	10
Deletion	Chr11	8089654	8089655	1
Deletion	Chr11	10569852	10569853	1
Deletion	Chr11	11032918	11386448	353530	51
Deletion	Chr3	14622955	14622956	1
Deletion	Chr9	17260174	17260183	9
Deletion	Chr10	19880077	19880078	1
Deletion	Chr4	20574010	20574011	1
Deletion	Chr1	20582029	20582046	17
Deletion	Chr4	21096219	21096223	4
Deletion	Chr5	21320342	21320343	1	LOC_Os05g35980
Deletion	Chr2	24189782	24189803	21
Deletion	Chr12	24390133	24390135	2
Deletion	Chr12	25476545	25476548	3
Deletion	Chr1	25864459	25864472	13	LOC_Os01g45550
Deletion	Chr1	38082357	38082358	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	3105924	3105926	3
Insertion	Chr2	24235268	24235278	11
Insertion	Chr3	31552236	31552237	2
Insertion	Chr4	8411775	8411775	1
Insertion	Chr5	2567681	2567682	2
Insertion	Chr7	11005952	11005976	25
Insertion	Chr7	1455532	1455543	12

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	968689	1539030	LOC_Os08g03310
Inversion	Chr8	968710	1539032	LOC_Os08g03310
Inversion	Chr1	6801628	7272843	LOC_Os01g13060
Inversion	Chr1	9838063	22691080
Inversion	Chr1	19823071	22330331
Inversion	Chr3	23743868	25836575	LOC_Os03g42650

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3874948	Chr1	9837983
Translocation	Chr11	3875234	Chr1	22690998
Translocation	Chr11	3875243	Chr1	6801635
Translocation	Chr11	3921327	Chr1	7272847	LOC_Os01g13060
Translocation	Chr5	7502539	Chr3	16768850
Translocation	Chr12	9052713	Chr4	13069486	2
Translocation	Chr8	15012535	Chr7	26841517

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