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Mutant Information

Mutant Name	FN846-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN846-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14137974	C-G	HET	UTR_3_PRIME
SBS	Chr1	24292437	C-T	HOMO	INTERGENIC
SBS	Chr1	32088096	G-T	HOMO	INTERGENIC
SBS	Chr10	14019870	C-T	HET	INTERGENIC
SBS	Chr10	14886219	C-T	HET	INTERGENIC
SBS	Chr10	333003	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	14531398	A-G	HET	INTERGENIC
SBS	Chr11	1818193	G-A	HET	INTERGENIC
SBS	Chr11	25011806	C-A	HOMO	INTERGENIC
SBS	Chr12	11396642	A-G	HET	INTERGENIC
SBS	Chr12	4461271	A-C	HET	INTERGENIC
SBS	Chr2	20712721	T-A	HET	INTRON
SBS	Chr2	25996851	G-A	HET	INTERGENIC
SBS	Chr2	26172956	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	28087196	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	17645942	C-T	HET	STOP_GAINED	LOC_Os03g30980
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr3	7129959	C-T	HOMO	INTRON
SBS	Chr3	7941152	T-C	HOMO	INTERGENIC
SBS	Chr4	12835681	C-G	HOMO	INTERGENIC
SBS	Chr4	24760587	A-T	HET	INTERGENIC
SBS	Chr4	4303802	T-G	HET	INTERGENIC
SBS	Chr4	971100	T-A	HET	INTERGENIC
SBS	Chr5	15072408	C-A	HET	INTERGENIC
SBS	Chr5	15419405	G-T	HET	INTERGENIC
SBS	Chr5	16290927	C-T	HET	INTRON
SBS	Chr5	1965199	A-G	HET	INTERGENIC
SBS	Chr5	20378103	A-C	HET	INTERGENIC
SBS	Chr6	14616789	C-G	HET	UTR_5_PRIME
SBS	Chr6	6812272	G-A	HOMO	INTERGENIC
SBS	Chr6	8823064	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15550
SBS	Chr6	9438393	T-A	HET	INTERGENIC
SBS	Chr7	11086266	C-T	HOMO	INTERGENIC
SBS	Chr7	12403177	C-T	HOMO	INTERGENIC
SBS	Chr7	15599599	C-G	HET	INTRON
SBS	Chr7	20473417	G-T	HOMO	INTERGENIC
SBS	Chr7	26465630	G-A	HOMO	INTRON
SBS	Chr7	7845546	C-T	HET	INTERGENIC
SBS	Chr7	8675827	A-G	HOMO	INTRON
SBS	Chr8	1368032	A-G	HET	INTERGENIC
SBS	Chr8	13782991	C-A	HET	INTERGENIC
SBS	Chr8	1401781	A-T	HET	INTERGENIC
SBS	Chr8	1719664	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03630
SBS	Chr9	13251077	G-A	HOMO	STOP_GAINED	LOC_Os09g21880
SBS	Chr9	3997712	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	149892	149893	1
Deletion	Chr8	2305655	2305657	2
Deletion	Chr10	2763862	2763866	4
Deletion	Chr6	3212366	3212375	9
Deletion	Chr3	3444799	3444811	12
Deletion	Chr4	3526873	3526879	6
Deletion	Chr5	4680237	4680240	3
Deletion	Chr11	7914115	7914125	10	LOC_Os11g14170
Deletion	Chr4	8184028	8184033	5	LOC_Os04g14580
Deletion	Chr6	8514825	8514826	1
Deletion	Chr4	12763001	12941000	178000	28
Deletion	Chr10	16382612	16382648	36
Deletion	Chr11	16749360	16749407	47
Deletion	Chr6	19647001	19911000	264000	39
Deletion	Chr2	24733030	24733036	6	LOC_Os02g40810
Deletion	Chr7	28292358	28292359	1
Deletion	Chr4	31410576	31410579	3	LOC_Os04g52750
Deletion	Chr1	31602426	31602437	11
Deletion	Chr1	40122026	40122029	3
Deletion	Chr1	40919504	40919507	3

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1356187	1356187	1
Insertion	Chr11	871553	871554	2
Insertion	Chr11	9715520	9715521	2
Insertion	Chr5	14520416	14520417	2
Insertion	Chr5	21507922	21507922	1
Insertion	Chr6	5112048	5112048	1
Insertion	Chr8	20085411	20085412	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	27644954	27959895
Inversion	Chr6	27644979	27959908

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5660128	Chr3	20221656	LOC_Os03g36520
Translocation	Chr5	8562120	Chr1	40306292

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