Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21118460	G-C	HET	INTERGENIC
SBS	Chr1	22419533	T-A	HET	INTERGENIC
SBS	Chr1	23332079	G-A	HOMO	INTERGENIC
SBS	Chr1	29394558	C-T	HET	INTERGENIC
SBS	Chr1	34489528	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	5276866	T-G	HOMO	INTERGENIC
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr10	19626284	G-A	HET	INTERGENIC
SBS	Chr11	20130562	T-G	HOMO	INTRON
SBS	Chr11	7029982	C-T	HET	INTERGENIC
SBS	Chr12	20898452	C-T	HET	INTRON
SBS	Chr12	22601203	G-A	HOMO	UTR_3_PRIME
SBS	Chr2	13141550	G-A	HOMO	INTERGENIC
SBS	Chr2	2307168	C-A	HET	INTERGENIC
SBS	Chr2	25688383	C-T	HOMO	INTERGENIC
SBS	Chr2	26304188	T-G	HOMO	INTERGENIC
SBS	Chr3	21723529	G-A	HET	INTERGENIC
SBS	Chr3	495993	C-T	HET	INTERGENIC
SBS	Chr3	8413121	G-A	HET	INTERGENIC
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr4	28053997	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47240
SBS	Chr4	31033662	A-G	HET	INTERGENIC
SBS	Chr6	21557849	G-A	HET	INTERGENIC
SBS	Chr6	2965101	A-C	HOMO	INTERGENIC
SBS	Chr7	13900523	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24410
SBS	Chr7	15547163	T-C	HET	INTERGENIC
SBS	Chr7	19044128	T-C	HET	INTERGENIC
SBS	Chr7	19156138	C-T	HET	INTERGENIC
SBS	Chr7	22971676	A-T	HET	INTRON
SBS	Chr7	23995263	T-G	HET	INTERGENIC
SBS	Chr7	6121432	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11070
SBS	Chr7	8404042	C-T	HET	INTERGENIC
SBS	Chr8	5812368	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10030
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr9	16139103	T-A	HET	INTERGENIC
SBS	Chr9	1957343	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	2279495	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1957333	1957339	6	LOC_Os09g03860
Deletion	Chr9	2600000	2600001	1	LOC_Os09g04880
Deletion	Chr9	4349164	4349165	1
Deletion	Chr2	4814456	4814458	2
Deletion	Chr1	5006986	5007009	23
Deletion	Chr8	7228530	7228543	13	LOC_Os08g12280
Deletion	Chr12	8142504	8142505	1
Deletion	Chr6	11382936	11382945	9	LOC_Os06g19900
Deletion	Chr7	11667001	11787000	120000	18
Deletion	Chr7	13347913	13347936	23	LOC_Os07g23610
Deletion	Chr7	15958468	15958469	1
Deletion	Chr7	18419110	18419112	2	LOC_Os07g31130
Deletion	Chr11	18883851	18883867	16
Deletion	Chr10	19170052	19170058	6
Deletion	Chr1	20171111	20171112	1
Deletion	Chr11	20441889	20441891	2
Deletion	Chr7	21510275	21510282	7	LOC_Os07g35950
Deletion	Chr6	22242993	22243002	9
Deletion	Chr11	22910820	22910821	1	LOC_Os11g38640
Deletion	Chr7	23509062	23509063	1	LOC_Os07g39270
Deletion	Chr5	25409573	25409575	2
Deletion	Chr4	25918814	25918815	1
Deletion	Chr4	25966072	25966077	5
Deletion	Chr2	35465671	35465674	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	22840117	22840118	2
Insertion	Chr3	25511321	25511322	2
Insertion	Chr3	8163030	8163032	3
Insertion	Chr5	29287891	29287892	2
Insertion	Chr5	4778545	4778545	1
Insertion	Chr8	2615921	2615922	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20044402	20092739	LOC_Os11g34290
Inversion	Chr11	20092976	20459846	2
Inversion	Chr4	31095519	31597192	LOC_Os04g53040

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	10902805	Chr1	34373527
Translocation	Chr11	20092962	Chr10	244583	LOC_Os11g34290

Main menu