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Mutant Information

Mutant Name	FN881-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN881-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11090147	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	19418877	C-T	HOMO	INTERGENIC
SBS	Chr10	22593470	C-T	HOMO	INTERGENIC
SBS	Chr11	16556981	T-A	HET	INTERGENIC
SBS	Chr11	18816108	C-A	HET	INTERGENIC
SBS	Chr2	12043042	C-G	HET	SYNONYMOUS_CODING
SBS	Chr2	20822209	G-A	HET	INTERGENIC
SBS	Chr2	4483994	T-A	HET	INTERGENIC
SBS	Chr3	17533498	C-T	HET	INTERGENIC
SBS	Chr3	28478878	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g49960
SBS	Chr3	9809907	G-A	HET	INTRON
SBS	Chr4	22379383	A-T	HOMO	INTERGENIC
SBS	Chr5	12081693	T-C	HET	INTERGENIC
SBS	Chr6	16428866	T-C	HET	INTRON
SBS	Chr6	17270444	A-T	HET	INTERGENIC
SBS	Chr6	21087505	G-A	HOMO	INTERGENIC
SBS	Chr6	6940674	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	9726316	T-C	HET	INTERGENIC
SBS	Chr7	4013879	C-T	HET	INTERGENIC
SBS	Chr7	7350280	A-G	HOMO	INTRON
SBS	Chr8	1865395	A-C	HET	INTERGENIC
SBS	Chr9	4988365	C-T	HOMO	INTERGENIC
SBS	Chr9	4988366	C-T	HOMO	INTERGENIC
SBS	Chr9	6735634	G-C	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2115514	2115515	1
Deletion	Chr7	3534001	3548000	14000	3
Deletion	Chr7	3686003	3686013	10
Deletion	Chr10	4724368	4724384	16
Deletion	Chr6	7454556	7454563	7
Deletion	Chr6	7543065	7543086	21
Deletion	Chr3	8155966	8155970	4
Deletion	Chr2	8502969	8502997	28	LOC_Os02g15230
Deletion	Chr10	9587041	9587050	9	LOC_Os10g18830
Deletion	Chr2	9616372	9622005	5633	LOC_Os02g16880
Deletion	Chr12	9659799	9659800	1	LOC_Os12g16840
Deletion	Chr3	9683431	9683432	1	LOC_Os03g17410
Deletion	Chr2	10331899	10331906	7
Deletion	Chr2	10389141	10389145	4	LOC_Os02g17940
Deletion	Chr2	13586030	13586045	15
Deletion	Chr9	15978491	15978492	1	LOC_Os09g26430
Deletion	Chr6	16280371	16280374	3
Deletion	Chr1	17156001	17178000	22000	6
Deletion	Chr2	17466605	17466607	2
Deletion	Chr8	19173473	19173475	2
Deletion	Chr11	19242305	19242332	27
Deletion	Chr9	20756441	20756442	1
Deletion	Chr12	20904932	20904934	2
Deletion	Chr11	22185632	22185640	8
Deletion	Chr8	22687697	22687705	8
Deletion	Chr4	22906305	22906310	5
Deletion	Chr6	28024701	28024703	2
Deletion	Chr2	28641034	28641037	3

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	35078320	35078320	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13125644	14061885	LOC_Os10g25380
Inversion	Chr1	26347075	26412341
Inversion	Chr1	26347117	26412343

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	687712	Chr7	11905023
Translocation	Chr6	2397567	Chr2	9621999	LOC_Os02g16880
Translocation	Chr6	2397583	Chr2	9616375
Translocation	Chr12	13872589	Chr7	3534203
Translocation	Chr12	13979398	Chr7	3547970	2
Translocation	Chr7	20728669	Chr3	9369492

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