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Mutant Information

Mutant Name	FN882-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN882-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21738075	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	33083075	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	42639768	G-T	HET	INTRON
SBS	Chr2	1593266	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g03780
SBS	Chr2	4084743	T-A	HOMO	INTRON
SBS	Chr2	24922212	A-T	HET	INTERGENIC
SBS	Chr3	2299028	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	2513219	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g05180
SBS	Chr3	16067074	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27970
SBS	Chr4	4236301	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g07944
SBS	Chr4	7208996	G-A	HOMO	INTERGENIC
SBS	Chr6	736499	C-T	HET	INTERGENIC
SBS	Chr6	30824873	C-T	HET	INTRON
SBS	Chr7	14139954	A-G	HOMO	INTERGENIC
SBS	Chr9	6210809	G-A	HET	INTERGENIC
SBS	Chr10	1457093	A-G	HET	SYNONYMOUS_CODING
SBS	Chr11	16631583	A-T	HET	INTERGENIC
SBS	Chr11	16689640	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28790
SBS	Chr11	21256201	C-G	HOMO	INTERGENIC
SBS	Chr12	271596	A-T	HET	INTERGENIC
SBS	Chr12	271597	G-T	HET	INTERGENIC
SBS	Chr12	12232931	G-A	HET	INTERGENIC
SBS	Chr12	18159850	G-T	HET	INTERGENIC
SBS	Chr12	21498583	T-C	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1348594	1348602	8	LOC_Os05g03320
Deletion	Chr10	1885001	2951000	1066000	151
Deletion	Chr2	2050817	2050822	5
Deletion	Chr6	2113178	2113188	10	LOC_Os06g04840
Deletion	Chr5	2219838	2219843	5
Deletion	Chr12	2466227	2466259	32
Deletion	Chr4	3702748	3702752	4
Deletion	Chr9	4592927	4592929	2
Deletion	Chr6	7435092	7435102	10
Deletion	Chr7	9359689	9359690	1	LOC_Os07g16054
Deletion	Chr6	10446716	10446717	1
Deletion	Chr3	14667461	14667465	4
Deletion	Chr10	14738299	14738304	5
Deletion	Chr11	15270496	15270504	8
Deletion	Chr3	16656358	16656359	1
Deletion	Chr3	19791810	19791812	2
Deletion	Chr6	20022515	20022516	1
Deletion	Chr11	20084797	20084800	3	LOC_Os11g34290
Deletion	Chr3	20911001	21088000	177000	30
Deletion	Chr6	24477990	24477996	6
Deletion	Chr5	26190530	26190539	9	LOC_Os05g45070
Deletion	Chr3	31933921	31952332	18411	3
Deletion	Chr3	32096504	32096525	21

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	28048756	28048799	44

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2780360	2867176	LOC_Os05g05590

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2570542	Chr1	8218341
Translocation	Chr7	19449251	Chr1	37074601

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