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Mutant Information

Mutant Name	FN883-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN883-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14347753	G-A	HOMO	INTRON
SBS	Chr1	29910189	C-T	HET	INTERGENIC
SBS	Chr1	30327032	G-C	HET	INTERGENIC
SBS	Chr1	3550238	A-T	HOMO	INTERGENIC
SBS	Chr1	3550239	A-T	HOMO	INTERGENIC
SBS	Chr1	41612971	C-T	HET	INTRON
SBS	Chr1	9632093	C-G	HOMO	INTRON
SBS	Chr10	3204817	T-G	HET	INTERGENIC
SBS	Chr12	15323127	G-A	HET	INTERGENIC
SBS	Chr2	28034651	G-A	HET	INTERGENIC
SBS	Chr2	31627856	A-G	HET	INTERGENIC
SBS	Chr2	33722931	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g55050
SBS	Chr2	33743162	G-C	HET	INTERGENIC
SBS	Chr2	4276599	C-T	HET	INTERGENIC
SBS	Chr3	33876436	G-A	HOMO	INTRON
SBS	Chr3	6729210	G-A	HET	INTERGENIC
SBS	Chr4	14963203	G-A	HET	INTERGENIC
SBS	Chr4	16745064	C-T	HET	INTERGENIC
SBS	Chr4	21538333	G-C	HOMO	INTERGENIC
SBS	Chr4	22513683	T-C	HET	INTERGENIC
SBS	Chr4	2314837	A-T	HET	INTERGENIC
SBS	Chr4	23179747	T-G	HET	INTRON
SBS	Chr4	27607057	G-A	HET	INTRON
SBS	Chr4	7120580	G-A	HET	INTERGENIC
SBS	Chr6	14340270	G-A	HET	INTERGENIC
SBS	Chr6	21538960	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g36650
SBS	Chr6	26780417	G-T	HET	INTRON
SBS	Chr6	5614859	A-T	HET	INTRON
SBS	Chr6	8584180	G-A	HET	INTERGENIC
SBS	Chr7	13304769	C-T	HET	INTRON
SBS	Chr7	23893021	T-A	HOMO	INTERGENIC
SBS	Chr8	12652696	G-T	HET	INTERGENIC
SBS	Chr8	15429262	A-T	HOMO	INTERGENIC
SBS	Chr8	15429263	C-T	HOMO	INTERGENIC
SBS	Chr8	16057415	G-T	HET	INTERGENIC
SBS	Chr8	19406897	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g31390
SBS	Chr8	9434679	A-G	HOMO	INTERGENIC
SBS	Chr9	13433707	G-A	HET	INTERGENIC
SBS	Chr9	21775163	A-T	HOMO	INTRON
SBS	Chr9	21997963	C-T	HET	INTERGENIC
SBS	Chr9	5738713	A-C	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	435534	435607	73
Deletion	Chr12	1263205	1263216	11
Deletion	Chr12	1823471	1823476	5
Deletion	Chr8	4198399	4198551	152
Deletion	Chr1	4799985	4799991	6
Deletion	Chr1	5325906	5325912	6
Deletion	Chr9	5533556	5533559	3
Deletion	Chr4	6809054	6809813	759	LOC_Os04g12340
Deletion	Chr2	7531569	7531570	1
Deletion	Chr6	8739278	8739289	11
Deletion	Chr1	13423297	13423300	3	LOC_Os01g23850
Deletion	Chr9	15661634	15661643	9
Deletion	Chr4	17201340	17201347	7	LOC_Os04g29030
Deletion	Chr7	19429672	19429687	15
Deletion	Chr12	20349003	20349006	3
Deletion	Chr5	20611001	20622000	11000	2
Deletion	Chr2	22893690	22893695	5	LOC_Os02g37880
Deletion	Chr5	23535834	23535839	5
Deletion	Chr6	23953122	23953130	8
Deletion	Chr4	25051234	25051236	2
Deletion	Chr6	25968065	25968069	4	LOC_Os06g43210
Deletion	Chr1	29490289	29490296	7

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14113580	14113580	1	LOC_Os01g25020
Insertion	Chr1	19331298	19331299	2
Insertion	Chr10	13066275	13066275	1
Insertion	Chr2	17454917	17454918	2	LOC_Os02g29380
Insertion	Chr5	14656419	14656419	1
Insertion	Chr5	20428418	20428418	1
Insertion	Chr9	8191471	8191472	2

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5065839	Chr5	24396057	LOC_Os05g41700
Translocation	Chr9	5066412	Chr8	26485687
Translocation	Chr7	6399806	Chr5	10232217
Translocation	Chr8	9306273	Chr3	19340951	2
Translocation	Chr7	15285313	Chr2	15956328
Translocation	Chr3	32005350	Chr1	42745584

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