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Mutant Information

Mutant Name	FN886-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN886-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13414082	C-T	HET	INTERGENIC
SBS	Chr1	26767897	C-T	HOMO	UTR_3_PRIME
SBS	Chr1	27976326	A-G	HET	INTERGENIC
SBS	Chr10	20512195	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g38386
SBS	Chr11	15706879	A-G	HET	SYNONYMOUS_CODING
SBS	Chr11	22999473	C-T	HET	INTERGENIC
SBS	Chr11	23387748	C-T	HET	INTERGENIC
SBS	Chr11	9680728	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17370
SBS	Chr12	19541031	T-C	HET	INTRON
SBS	Chr12	23593232	G-A	HET	INTRON
SBS	Chr2	10399803	T-G	HET	INTERGENIC
SBS	Chr2	14148541	T-A	HET	INTERGENIC
SBS	Chr2	17533721	C-G	HET	INTRON
SBS	Chr2	17865253	A-G	HET	INTRON
SBS	Chr2	23691737	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	27043449	C-T	HET	INTERGENIC
SBS	Chr3	10429488	C-T	HET	INTRON
SBS	Chr3	14101827	T-C	HET	INTERGENIC
SBS	Chr3	15756800	C-T	HET	INTERGENIC
SBS	Chr3	28490869	G-A	HOMO	INTERGENIC
SBS	Chr3	33784090	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g59340
SBS	Chr4	11609536	G-A	HOMO	INTERGENIC
SBS	Chr4	33348689	C-T	HET	INTERGENIC
SBS	Chr4	8912519	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr5	16929493	G-A	HET	INTRON
SBS	Chr5	28797131	T-A	HET	INTRON
SBS	Chr6	22973955	A-G	HET	INTERGENIC
SBS	Chr6	24280416	T-A	HET	SYNONYMOUS_CODING
SBS	Chr6	28976808	C-T	HET	INTERGENIC
SBS	Chr7	12456921	A-T	HOMO	INTERGENIC
SBS	Chr7	12456922	A-T	HOMO	INTERGENIC
SBS	Chr7	28553160	G-A	HOMO	INTRON
SBS	Chr7	693725	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g02180
SBS	Chr7	9154182	G-A	HOMO	INTRON
SBS	Chr8	15423636	A-G	HOMO	INTERGENIC
SBS	Chr8	28217997	G-A	HET	INTERGENIC
SBS	Chr9	19209660	G-A	HOMO	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2271564	2271566	2
Deletion	Chr5	2684297	2684305	8	LOC_Os05g05400
Deletion	Chr5	2939875	2940701	826	LOC_Os05g05860
Deletion	Chr1	3547454	3547456	2
Deletion	Chr2	3999743	3999750	7
Deletion	Chr4	4291204	4291221	17
Deletion	Chr5	4633018	4633023	5
Deletion	Chr9	5294523	5294608	85	LOC_Os09g09770
Deletion	Chr8	8350191	8350194	3
Deletion	Chr12	10696206	10696213	7	LOC_Os12g18500
Deletion	Chr6	15540733	15540739	6
Deletion	Chr6	15707867	15707869	2
Deletion	Chr2	16288489	16288496	7
Deletion	Chr5	16930761	16930771	10
Deletion	Chr11	18736587	18736588	1
Deletion	Chr10	20509471	20509472	1
Deletion	Chr9	21703884	21703889	5	LOC_Os09g37660
Deletion	Chr7	22982172	22982180	8
Deletion	Chr3	24403602	24403614	12
Deletion	Chr1	25611857	25611863	6
Deletion	Chr6	25766305	25766306	1
Deletion	Chr8	28353987	28354011	24
Deletion	Chr8	28373668	28373672	4
Deletion	Chr6	28538125	28538136	11
Deletion	Chr11	28657916	28657917	1
Deletion	Chr6	28876681	28876697	16	LOC_Os06g47720
Deletion	Chr7	29529257	29529259	2
Deletion	Chr2	31436769	31436781	12
Deletion	Chr1	33460154	33460163	9
Deletion	Chr1	40694301	40694302	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	25828609	25828616	8
Insertion	Chr6	7855242	7855243	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8926190	10872630	LOC_Os02g18660

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4141742	Chr2	17320663	LOC_Os03g08110

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