Search Results

Mutant Information

Mutant Name	FN889-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN889-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13019815	A-G	HET	INTRON
SBS	Chr1	22203196	A-C	HET	INTERGENIC
SBS	Chr1	28948701	A-G	HOMO	INTERGENIC
SBS	Chr1	31811657	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g55270
SBS	Chr2	10301591	T-C	HET	INTERGENIC
SBS	Chr2	20842851	C-A	HOMO	INTRON
SBS	Chr3	9112407	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16530
SBS	Chr3	17369719	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	23061079	A-T	HOMO	INTRON
SBS	Chr4	6136966	T-G	HET	INTRON
SBS	Chr4	13909426	A-T	HET	INTERGENIC
SBS	Chr4	17196123	G-T	HET	INTERGENIC
SBS	Chr4	17676636	G-A	HOMO	INTERGENIC
SBS	Chr4	32714081	C-G	HET	INTRON
SBS	Chr5	24466092	C-G	HET	INTRON
SBS	Chr6	14268783	G-A	HET	INTRON
SBS	Chr6	18113562	T-C	HET	INTERGENIC
SBS	Chr7	2953033	C-T	HET	INTERGENIC
SBS	Chr7	14341554	A-T	HET	INTERGENIC
SBS	Chr7	14341555	C-T	HET	INTERGENIC
SBS	Chr7	15821097	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27230
SBS	Chr7	15821098	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	18925970	T-C	HET	INTRON
SBS	Chr7	22248973	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37140
SBS	Chr8	1634938	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03490
SBS	Chr8	3961080	A-T	HET	INTRON
SBS	Chr8	11942052	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g19950
SBS	Chr9	3186030	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	6569849	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11750
SBS	Chr9	21185709	A-G	HET	INTERGENIC
SBS	Chr10	15824395	T-A	HOMO	INTERGENIC
SBS	Chr11	27712752	G-T	HOMO	INTERGENIC
SBS	Chr12	21925443	G-C	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	460307	460308	1
Deletion	Chr12	4684832	4684838	6
Deletion	Chr4	4770179	4770193	14	LOC_Os04g08764
Deletion	Chr11	4792616	4792635	19
Deletion	Chr5	7705220	7705228	8
Deletion	Chr11	7716129	7716137	8
Deletion	Chr4	8216847	8216851	4	LOC_Os04g14654
Deletion	Chr3	9197001	9417000	220000	27
Deletion	Chr5	9606094	9606101	7	LOC_Os05g16850
Deletion	Chr9	12143484	12143485	1
Deletion	Chr4	13119784	13119795	11
Deletion	Chr6	14268645	14268676	31
Deletion	Chr8	16048967	16048968	1
Deletion	Chr9	19126512	19126513	1	LOC_Os09g32050
Deletion	Chr2	19909968	19909970	2
Deletion	Chr11	24269257	24269272	15
Deletion	Chr5	24607046	24607071	25	LOC_Os05g42040
Deletion	Chr8	26647492	26647496	4
Deletion	Chr1	28381403	28381414	11	LOC_Os01g49370
Deletion	Chr11	28951144	28951152	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	6071987	6071990	4
Insertion	Chr9	15014805	15014808	4
Insertion	Chr1	40061292	40061293	2
Insertion	Chr2	4646560	4646561	2
Insertion	Chr3	34782778	34782778	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26967544	31371732	LOC_Os04g45580

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	23038834	Chr3	20268724	LOC_Os03g36560

Main menu