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Mutant Information

Mutant Name	FN895-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN895-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1121314	T-A	HOMO	INTRON
SBS	Chr1	19451307	G-T	HET	INTERGENIC
SBS	Chr1	22960553	G-A	HET	INTERGENIC
SBS	Chr1	25012027	A-G	HET	INTRON
SBS	Chr1	30699487	G-A	HOMO	INTERGENIC
SBS	Chr1	30699488	G-A	HOMO	INTERGENIC
SBS	Chr1	7479776	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr10	1343150	T-C	HET	INTERGENIC
SBS	Chr10	13972551	C-G	HET	INTERGENIC
SBS	Chr11	17402386	C-T	HET	INTERGENIC
SBS	Chr12	15298499	C-A	HOMO	INTERGENIC
SBS	Chr12	27182619	G-A	HET	INTERGENIC
SBS	Chr2	11315867	T-C	HET	INTERGENIC
SBS	Chr2	23178655	A-T	HOMO	INTRON
SBS	Chr3	20322982	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g36640
SBS	Chr3	22129614	C-T	HOMO	INTERGENIC
SBS	Chr4	1189495	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02960
SBS	Chr4	1462452	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03410
SBS	Chr4	22404955	T-C	HET	INTERGENIC
SBS	Chr4	23338071	G-T	HOMO	INTERGENIC
SBS	Chr4	27491433	G-A	HOMO	INTERGENIC
SBS	Chr4	28959074	T-C	HOMO	INTRON
SBS	Chr4	34805294	C-T	HET	INTERGENIC
SBS	Chr4	9537826	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	10418057	C-T	HOMO	INTERGENIC
SBS	Chr5	11689606	T-C	HOMO	INTERGENIC
SBS	Chr5	22529465	A-C	HET	INTERGENIC
SBS	Chr6	4221148	T-A	HET	INTERGENIC
SBS	Chr7	5490354	C-T	HOMO	INTERGENIC
SBS	Chr7	9798988	T-A	HET	INTERGENIC
SBS	Chr8	9857480	T-C	HOMO	INTERGENIC
SBS	Chr9	10177519	C-T	HET	INTRON
SBS	Chr9	18065239	G-A	HOMO	INTERGENIC
SBS	Chr9	4091276	C-T	HET	INTRON
SBS	Chr9	7260586	T-C	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	240031	240032	1
Deletion	Chr1	4921082	4921095	13
Deletion	Chr4	6541501	6541504	3
Deletion	Chr8	9857471	9857472	1
Deletion	Chr3	10560271	10560272	1
Deletion	Chr5	13948600	13948603	3
Deletion	Chr4	15450721	15450722	1
Deletion	Chr2	17176495	17176501	6
Deletion	Chr7	17741516	17741526	10
Deletion	Chr8	22895266	22895268	2
Deletion	Chr7	23286081	23286084	3
Deletion	Chr3	23387278	23387279	1
Deletion	Chr7	24578448	24578454	6
Deletion	Chr3	24733202	24733204	2
Deletion	Chr8	26279671	26279683	12
Deletion	Chr8	27113549	27113555	6
Deletion	Chr2	31724276	31724277	1
Deletion	Chr2	32052096	32052097	1	LOC_Os02g52360
Deletion	Chr1	32220399	32220401	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	8415775	8415775	1
Insertion	Chr5	24432561	24432561	1
Insertion	Chr5	27863457	27863460	4
Insertion	Chr9	7196896	7196897	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	23140800	24508296

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	23178171	Chr1	928765	LOC_Os02g38340
Translocation	Chr2	24407527	Chr1	927600	LOC_Os02g40320

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