Search Results

Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7242821	A-T	HOMO	INTERGENIC
SBS	Chr1	11533038	G-T	HOMO	INTERGENIC
SBS	Chr2	10666698	G-A	HET	INTERGENIC
SBS	Chr3	1567623	G-A	HOMO	INTERGENIC
SBS	Chr3	9847972	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g17700
SBS	Chr3	10892362	A-G	HOMO	INTRON
SBS	Chr3	16801296	G-A	HOMO	INTERGENIC
SBS	Chr3	34280711	G-C	HOMO	INTERGENIC
SBS	Chr4	5711000	A-G	HOMO	INTERGENIC
SBS	Chr4	13048270	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g22990
SBS	Chr4	30851457	G-A	HOMO	INTERGENIC
SBS	Chr5	19855530	T-C	HET	INTERGENIC
SBS	Chr5	19879457	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	27189105	C-T	HET	INTRON
SBS	Chr6	26752986	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44310
SBS	Chr6	27116801	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44860
SBS	Chr7	10033835	A-G	HET	INTRON
SBS	Chr7	10227161	T-A	HET	INTERGENIC
SBS	Chr7	11677682	T-C	HET	INTERGENIC
SBS	Chr7	28618241	G-A	HET	INTERGENIC
SBS	Chr8	14101329	C-T	HET	INTERGENIC
SBS	Chr9	2211028	G-T	HOMO	INTERGENIC
SBS	Chr9	2211030	A-T	HOMO	INTERGENIC
SBS	Chr9	6855224	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	7231483	T-C	HET	INTERGENIC
SBS	Chr9	8974425	C-T	HET	INTERGENIC
SBS	Chr9	11028009	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18010
SBS	Chr9	11391007	A-T	HET	SYNONYMOUS_CODING
SBS	Chr9	11391008	A-T	HET	STOP_GAINED	LOC_Os09g18594
SBS	Chr9	14828064	A-T	HET	INTERGENIC
SBS	Chr10	31612	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g01020
SBS	Chr11	21265001	C-T	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	733860	733875	15	LOC_Os12g02310
Deletion	Chr7	784474	784483	9
Deletion	Chr10	1051847	1051849	2
Deletion	Chr10	1986586	1986593	7
Deletion	Chr5	2135001	2158000	23000	LOC_Os05g04584
Deletion	Chr7	2514236	2514237	1
Deletion	Chr6	2715102	2715105	3	LOC_Os06g05930
Deletion	Chr6	5309501	5309502	1
Deletion	Chr4	7338124	7338172	48
Deletion	Chr10	7373025	7373031	6
Deletion	Chr9	8035322	8035323	1
Deletion	Chr10	9178665	9178677	12
Deletion	Chr6	10115620	10115630	10
Deletion	Chr8	16087001	16459000	372000	53
Deletion	Chr6	18014981	18015001	20
Deletion	Chr4	20199582	20199593	11
Deletion	Chr4	20897190	20897208	18
Deletion	Chr11	25023109	25023110	1	LOC_Os11g41680
Deletion	Chr6	25784108	25784111	3
Deletion	Chr3	26203315	26203466	151	LOC_Os03g46330
Deletion	Chr11	27289140	27289150	10
Deletion	Chr3	31840598	31840599	1	LOC_Os03g55920

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	5051610	5051612	3
Insertion	Chr10	63279	63282	4
Insertion	Chr11	28862757	28862759	3
Insertion	Chr11	19039861	19039862	2
Insertion	Chr8	695702	695702	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18225500	18746686
Inversion	Chr3	24869843	26203467	LOC_Os03g46330
Inversion	Chr5	26962059	27024530

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	7040362	Chr1	23343913	LOC_Os01g41240

Main menu