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Mutant Information

Mutant Name	FN898-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN898-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12282912	A-G	HOMO	INTERGENIC
SBS	Chr1	12460733	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22170
SBS	Chr1	14355091	C-T	HET	INTRON
SBS	Chr1	32718221	C-T	HOMO	INTERGENIC
SBS	Chr1	5246166	C-T	HOMO	INTERGENIC
SBS	Chr1	7770980	C-T	HET	INTERGENIC
SBS	Chr10	13676898	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26370
SBS	Chr10	15889817	T-C	HET	INTRON
SBS	Chr10	5918763	G-C	HET	INTRON
SBS	Chr10	9658080	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18970
SBS	Chr11	1720052	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g04220
SBS	Chr11	3823784	T-G	HET	INTERGENIC
SBS	Chr11	4118323	G-A	HET	INTERGENIC
SBS	Chr12	10528057	A-G	HET	INTRON
SBS	Chr12	13967426	A-C	HET	INTERGENIC
SBS	Chr12	14410128	A-G	HET	INTERGENIC
SBS	Chr12	14534439	A-G	HET	INTERGENIC
SBS	Chr12	17105480	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28930
SBS	Chr12	21056852	T-G	HET	INTERGENIC
SBS	Chr12	22833967	C-G	HET	INTERGENIC
SBS	Chr12	9796668	G-A	HET	INTERGENIC
SBS	Chr2	14862684	C-T	HET	INTERGENIC
SBS	Chr2	15330398	C-G	HET	INTERGENIC
SBS	Chr2	20212545	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	23864287	A-G	HET	UTR_3_PRIME
SBS	Chr2	24140450	T-A	HET	SYNONYMOUS_CODING
SBS	Chr2	26177599	A-C	HET	INTERGENIC
SBS	Chr2	31866531	A-G	HET	INTERGENIC
SBS	Chr2	6986757	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13140
SBS	Chr3	11222118	G-A	HET	INTERGENIC
SBS	Chr3	24841757	C-T	HOMO	INTERGENIC
SBS	Chr3	27962051	G-A	HET	INTERGENIC
SBS	Chr3	34959910	A-T	HET	INTERGENIC
SBS	Chr3	6959011	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g12910
SBS	Chr3	878269	C-G	HET	INTERGENIC
SBS	Chr4	14960064	G-A	HET	INTERGENIC
SBS	Chr5	11871481	C-T	HET	INTERGENIC
SBS	Chr5	14835515	C-T	HET	INTERGENIC
SBS	Chr5	22776086	T-A	HET	UTR_3_PRIME
SBS	Chr5	27972000	C-A	HET	INTERGENIC
SBS	Chr5	669213	A-T	HET	INTERGENIC
SBS	Chr6	19982219	G-A	HET	INTERGENIC
SBS	Chr6	26679273	G-A	HET	INTERGENIC
SBS	Chr7	11489776	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g19420
SBS	Chr7	19497935	A-C	HET	INTRON
SBS	Chr7	6088138	C-G	HET	INTERGENIC
SBS	Chr7	6982782	T-C	HET	INTERGENIC
SBS	Chr8	20358169	G-C	HOMO	INTERGENIC
SBS	Chr8	22701182	G-A	HOMO	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	738778	738779	1
Deletion	Chr1	1639612	1639614	2
Deletion	Chr9	2726496	2726518	22
Deletion	Chr5	5925229	5925236	7
Deletion	Chr10	6881485	6881486	1
Deletion	Chr3	6927370	6927371	1
Deletion	Chr2	8320929	8320949	20
Deletion	Chr5	8328527	8328538	11
Deletion	Chr2	9609337	9609343	6
Deletion	Chr7	9676641	9676642	1	LOC_Os07g16510
Deletion	Chr2	9807001	9821000	14000	3
Deletion	Chr12	10520425	10521866	1441
Deletion	Chr9	10810246	10810248	2	LOC_Os09g17680
Deletion	Chr1	11959154	11959155	1
Deletion	Chr10	13144096	13144107	11
Deletion	Chr5	16696519	16696521	2
Deletion	Chr3	18090024	18090028	4	LOC_Os03g31690
Deletion	Chr7	19284956	19284973	17
Deletion	Chr3	21892001	21905000	13000	2
Deletion	Chr3	22593001	22843000	250000	34
Deletion	Chr1	22690109	22690114	5
Deletion	Chr2	22849063	22849091	28
Deletion	Chr9	22911698	22911699	1	LOC_Os09g39960
Deletion	Chr1	23784782	23784783	1	LOC_Os01g41950
Deletion	Chr2	24231075	24231078	3
Deletion	Chr2	24530524	24530527	3	LOC_Os02g40454
Deletion	Chr8	25004788	25005183	395
Deletion	Chr7	29029105	29029128	23	LOC_Os07g48520
Deletion	Chr1	30699680	30699682	2
Deletion	Chr3	32861172	32861186	14	LOC_Os03g57660

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	37563712	37563722	11	LOC_Os01g64740
Insertion	Chr10	2716109	2716109	1	LOC_Os10g05500
Insertion	Chr12	7813592	7813593	2
Insertion	Chr2	24964446	24964446	1
Insertion	Chr4	22842724	22842724	1
Insertion	Chr6	3999411	3999412	2
Insertion	Chr8	25234857	25234860	4
Insertion	Chr9	13061771	13061772	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1631173	5303659	LOC_Os12g03940
Inversion	Chr4	2364828	23954040
Inversion	Chr2	9802665	10134416	LOC_Os02g17610
Inversion	Chr2	9820981	10134418	2
Inversion	Chr3	21892209	21953772
Inversion	Chr3	21953775	22842933
Inversion	Chr3	21954168	22593068
Inversion	Chr3	21954181	22951094

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	10520428	Chr2	31459033
Translocation	Chr12	10521859	Chr2	31459030
Translocation	Chr11	11061550	Chr3	1075536	LOC_Os11g19300
Translocation	Chr4	11551033	Chr2	17320491
Translocation	Chr8	12459874	Chr1	37661607	LOC_Os08g20740
Translocation	Chr9	19907909	Chr3	34805508	2
Translocation	Chr7	23613032	Chr2	15416730	2
Translocation	Chr8	25005170	Chr6	12783800
Translocation	Chr12	27343170	Chr2	9346939	2

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