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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13467976	G-A	HOMO	INTERGENIC
SBS	Chr1	31394305	C-T	HOMO	INTERGENIC
SBS	Chr1	33655492	G-A	HET	INTERGENIC
SBS	Chr10	11784218	G-C	HET	INTERGENIC
SBS	Chr10	11784219	A-G	HET	INTERGENIC
SBS	Chr10	12407415	C-T	HET	INTERGENIC
SBS	Chr10	17292057	T-C	HET	INTERGENIC
SBS	Chr11	11179822	G-A	HOMO	INTERGENIC
SBS	Chr11	1167693	A-T	HET	INTERGENIC
SBS	Chr11	18258937	T-G	HET	INTRON
SBS	Chr11	25728381	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42710
SBS	Chr11	7589924	T-A	HET	INTERGENIC
SBS	Chr12	10496081	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18190
SBS	Chr12	21403139	C-T	HET	INTERGENIC
SBS	Chr2	11685367	C-T	HET	INTERGENIC
SBS	Chr2	14509345	C-G	HET	UTR_3_PRIME
SBS	Chr2	20553194	C-A	HET	INTRON
SBS	Chr2	20553195	T-A	HET	INTRON
SBS	Chr2	26392004	C-T	HOMO	INTERGENIC
SBS	Chr3	12212667	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	21448232	T-C	HOMO	INTERGENIC
SBS	Chr3	36208168	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	5435212	A-G	HET	INTRON
SBS	Chr4	10793252	C-A	HET	INTERGENIC
SBS	Chr4	21910966	T-C	HOMO	INTERGENIC
SBS	Chr4	22977879	T-C	HOMO	UTR_5_PRIME
SBS	Chr4	6168483	C-T	HET	INTERGENIC
SBS	Chr5	20891404	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g35180
SBS	Chr5	21516761	C-A	HOMO	INTERGENIC
SBS	Chr5	6784789	A-C	HET	INTERGENIC
SBS	Chr7	13623073	C-G	HET	INTERGENIC
SBS	Chr7	18226425	G-A	HOMO	INTRON
SBS	Chr8	17418744	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28520
SBS	Chr8	24603088	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g38930
SBS	Chr8	4854231	C-T	HET	INTERGENIC
SBS	Chr8	4854232	C-T	HET	INTERGENIC
SBS	Chr9	10926085	T-A	HET	SYNONYMOUS_CODING
SBS	Chr9	2774317	G-A	HET	INTERGENIC
SBS	Chr9	4897193	T-C	HET	INTERGENIC
SBS	Chr9	9612539	C-T	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2881901	2881918	17
Deletion	Chr12	3389438	3389439	1
Deletion	Chr7	4537088	4537090	2
Deletion	Chr7	4551120	4551122	2
Deletion	Chr5	6784790	6784792	2
Deletion	Chr5	6784792	6784794	2
Deletion	Chr12	9341001	9485000	144000	24
Deletion	Chr9	10133934	10133939	5
Deletion	Chr3	11543836	11543844	8
Deletion	Chr10	11785830	11785832	2
Deletion	Chr5	12348308	12348320	12
Deletion	Chr3	12370005	12370006	1
Deletion	Chr9	13311171	13311173	2
Deletion	Chr10	13415588	13415589	1	LOC_Os10g25880
Deletion	Chr4	13779622	13779623	1
Deletion	Chr4	16117707	16117715	8
Deletion	Chr9	16300272	16300273	1
Deletion	Chr11	17383154	17383167	13
Deletion	Chr6	17734589	17734591	2
Deletion	Chr6	19388027	19388040	13	LOC_Os06g33300
Deletion	Chr2	20207848	20207869	21	LOC_Os02g33910
Deletion	Chr2	21411014	21411037	23	LOC_Os02g35590
Deletion	Chr11	23872173	23872174	1
Deletion	Chr2	25922001	25976000	54000	9
Deletion	Chr5	27922668	27922676	8
Deletion	Chr7	28372205	28372214	9
Deletion	Chr1	30258509	30258510	1	LOC_Os01g52640
Deletion	Chr1	30576706	30576708	2
Deletion	Chr1	31394307	31394311	4
Deletion	Chr4	33061599	33061604	5
Deletion	Chr1	33982501	33982504	3	LOC_Os01g58810
Deletion	Chr2	35438290	35438294	4
Deletion	Chr1	39069905	39069911	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	23855122	23855122	1
Insertion	Chr12	7166323	7166332	10
Insertion	Chr8	15238874	15238875	2
Insertion	Chr8	24210822	24210823	2
Insertion	Chr9	4897275	4897276	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3448868	4208402
Inversion	Chr5	3465852	4208399	LOC_Os05g06670
Inversion	Chr4	6100417	18323903
Inversion	Chr2	16081489	16096151
Inversion	Chr2	16082615	16096152	LOC_Os02g27300
Inversion	Chr10	20129261	20209851
Inversion	Chr2	25348487	28249280	LOC_Os02g42150

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5744942	Chr2	16081486
Translocation	Chr8	7731011	Chr2	12621038	2
Translocation	Chr11	8958664	Chr5	10674037	LOC_Os05g18470
Translocation	Chr8	9841284	Chr3	18929725	LOC_Os08g16140
Translocation	Chr11	10816576	Chr3	10819053	2
Translocation	Chr10	11338878	Chr5	5644610	2
Translocation	Chr7	20719776	Chr5	3465867	LOC_Os05g06670
Translocation	Chr7	20720233	Chr5	3468016	LOC_Os05g06680
Translocation	Chr6	26920594	Chr4	11757204	2
Translocation	Chr6	29009429	Chr2	16082677	LOC_Os02g27300

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