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Mutant Information

Mutant Name	FN900-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN900-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	529345	C-T	HET	INTERGENIC
SBS	Chr10	19022673	T-A	HET	INTRON
SBS	Chr10	19026145	T-C	HET	INTERGENIC
SBS	Chr10	22905633	G-T	HET	INTERGENIC
SBS	Chr2	3056656	C-T	HET	INTERGENIC
SBS	Chr2	7593078	G-T	HET	INTERGENIC
SBS	Chr3	35185487	T-A	HET	INTERGENIC
SBS	Chr4	10847702	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19480
SBS	Chr4	12850652	C-T	HET	INTERGENIC
SBS	Chr4	13486002	G-T	HET	INTERGENIC
SBS	Chr4	4423778	G-A	HET	INTERGENIC
SBS	Chr4	4423781	C-A	HET	INTERGENIC
SBS	Chr4	9917214	C-T	HET	INTERGENIC
SBS	Chr5	22774621	C-G	HET	INTERGENIC
SBS	Chr7	10467810	C-T	HET	INTERGENIC
SBS	Chr7	14467536	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25330
SBS	Chr7	22710155	C-T	HET	INTERGENIC
SBS	Chr8	5412885	T-G	HET	INTERGENIC
SBS	Chr8	6321438	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g10740
SBS	Chr9	3559707	C-T	HET	INTERGENIC
SBS	Chr9	8258080	G-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1754144	1754153	9
Deletion	Chr5	1763714	1763715	1
Deletion	Chr8	3565913	3565924	11
Deletion	Chr3	4316260	4316262	2
Deletion	Chr4	4346644	4346738	94
Deletion	Chr6	5658686	5658999	313
Deletion	Chr4	6257287	6257888	601	LOC_Os04g11440
Deletion	Chr9	7271303	7271304	1	LOC_Os09g12710
Deletion	Chr4	9933087	9933096	9
Deletion	Chr3	10288965	10288966	1
Deletion	Chr4	10404054	10404065	11	LOC_Os04g18750
Deletion	Chr1	11966025	11966033	8
Deletion	Chr2	13267214	13267217	3	LOC_Os02g22250
Deletion	Chr5	17082001	17118000	36000	5
Deletion	Chr5	18346421	18349627	3206	LOC_Os05g31530
Deletion	Chr10	18692324	18692333	9	LOC_Os10g35030
Deletion	Chr9	21055737	21055742	5	LOC_Os09g36490
Deletion	Chr1	22063574	22063581	7
Deletion	Chr3	23295532	23295536	4
Deletion	Chr1	24652833	24652835	2
Deletion	Chr8	26113193	26113198	5
Deletion	Chr3	26332356	26336912	4556	LOC_Os03g46540
Deletion	Chr4	27157611	27157747	136	LOC_Os04g45860

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	33348704	33348706	3
Insertion	Chr11	17266855	17266857	3
Insertion	Chr2	24179472	24179473	2
Insertion	Chr4	11260303	11260303	1
Insertion	Chr4	21130579	21130580	2
Insertion	Chr6	21776762	21776762	1
Insertion	Chr8	27600087	27600087	1

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2782177	3345947	2
Inversion	Chr6	2782217	3345947	2
Inversion	Chr4	3900278	4425123	2
Inversion	Chr4	10225299	10765458	LOC_Os04g18490
Inversion	Chr4	10253305	10767864	LOC_Os04g18570
Inversion	Chr4	10765455	10924108	LOC_Os04g19610
Inversion	Chr4	10823394	11145041	LOC_Os04g19990
Inversion	Chr4	10824712	11145453	LOC_Os04g19990
Inversion	Chr5	17082221	18349624	LOC_Os05g29090
Inversion	Chr5	17118247	18346447	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5658983	Chr3	8751633	2
Translocation	Chr11	11359049	Chr5	9013241	LOC_Os05g15960
Translocation	Chr11	15714467	Chr9	6778101	LOC_Os11g27329
Translocation	Chr5	17118222	Chr4	6257316	2
Translocation	Chr11	17512065	Chr7	13570804
Translocation	Chr5	22598187	Chr4	6257934	2
Translocation	Chr8	22804306	Chr2	16275328

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