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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11081058	G-A	HET	INTRON
SBS	Chr1	13322208	C-A	HET	INTRON
SBS	Chr1	13322210	T-A	HET	INTRON
SBS	Chr1	21079068	C-A	HOMO	INTRON
SBS	Chr10	12417755	C-T	HET	INTERGENIC
SBS	Chr10	15755838	C-A	HET	SYNONYMOUS_CODING
SBS	Chr10	3587879	G-A	HET	INTRON
SBS	Chr11	7391556	G-T	HOMO	INTERGENIC
SBS	Chr12	10844427	G-A	HET	INTERGENIC
SBS	Chr12	11888574	G-C	HET	INTERGENIC
SBS	Chr12	2949898	C-T	HET	INTERGENIC
SBS	Chr2	13293737	C-T	HOMO	INTERGENIC
SBS	Chr2	20838555	A-T	HET	INTERGENIC
SBS	Chr3	11130380	A-C	HET	INTERGENIC
SBS	Chr3	18708901	C-T	HET	INTERGENIC
SBS	Chr3	21475838	A-G	HET	INTERGENIC
SBS	Chr3	22843833	C-A	HET	INTERGENIC
SBS	Chr3	2813584	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr4	12559031	A-G	HOMO	INTERGENIC
SBS	Chr4	13464637	T-G	HOMO	INTERGENIC
SBS	Chr4	31654324	T-C	HOMO	INTRON
SBS	Chr4	7606734	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g13630
SBS	Chr4	7835684	G-A	HET	INTRON
SBS	Chr5	6833696	G-T	HET	INTRON
SBS	Chr5	6833697	T-G	HET	INTRON
SBS	Chr6	11928419	G-T	HET	INTRON
SBS	Chr6	22494240	A-C	HET	INTERGENIC
SBS	Chr6	335541	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01560
SBS	Chr7	15743899	A-T	HET	INTRON
SBS	Chr8	18838655	A-G	HET	INTERGENIC
SBS	Chr8	5529995	C-T	HET	INTERGENIC
SBS	Chr9	18369318	A-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	99381	99387	6
Deletion	Chr5	150755	150765	10	LOC_Os05g01210
Deletion	Chr4	797958	797963	5
Deletion	Chr2	3590576	3590577	1
Deletion	Chr8	6643001	6722000	79000	16
Deletion	Chr8	6775001	7100000	325000	45
Deletion	Chr12	7111760	7111774	14
Deletion	Chr1	8786502	8786506	4
Deletion	Chr12	8991962	8991963	1	LOC_Os12g15750
Deletion	Chr3	9752150	9752151	1	LOC_Os03g17550
Deletion	Chr1	10339168	10339175	7
Deletion	Chr10	12618247	12618251	4	LOC_Os10g24580
Deletion	Chr10	12747451	12747459	8	LOC_Os10g24790
Deletion	Chr8	13218001	13450000	232000	30
Deletion	Chr5	13294087	13294108	21	LOC_Os05g23290
Deletion	Chr6	15230899	15230903	4
Deletion	Chr9	15434740	15434748	8
Deletion	Chr4	17526659	17526665	6	LOC_Os04g29469
Deletion	Chr12	20758776	20758778	2
Deletion	Chr3	21747970	21747975	5
Deletion	Chr3	23239628	23240022	394	LOC_Os03g41850
Deletion	Chr2	23610961	23610966	5
Deletion	Chr11	25137100	25137113	13
Deletion	Chr4	31326156	31326168	12
Deletion	Chr4	31345682	31345705	23

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	2690502	2690502	1
Insertion	Chr2	28584802	28584802	1
Insertion	Chr6	23925613	23925616	4
Insertion	Chr6	27452264	27452273	10
Insertion	Chr7	24313236	24313237	2
Insertion	Chr9	10347710	10347710	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18905199	19090011	LOC_Os05g32400
Inversion	Chr1	21394063	22186980

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3500038	Chr4	16367980
Translocation	Chr5	17160769	Chr3	23240020	2
Translocation	Chr5	17160781	Chr3	23239631	2

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