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Mutant Information

Mutant Name	FN914-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN914-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10409185	G-A	HET	INTERGENIC
SBS	Chr1	26045957	C-T	HET	INTERGENIC
SBS	Chr1	26762137	C-T	HET	INTERGENIC
SBS	Chr1	26909736	C-T	HET	INTERGENIC
SBS	Chr1	30609462	A-G	HET	INTRON
SBS	Chr1	37869092	G-A	HET	INTERGENIC
SBS	Chr1	37869093	A-T	HET	INTERGENIC
SBS	Chr10	16570207	T-A	HET	INTERGENIC
SBS	Chr10	17400609	T-C	HET	INTRON
SBS	Chr10	6304367	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11370
SBS	Chr10	6526349	A-T	HET	INTRON
SBS	Chr11	4314135	A-T	HOMO	INTERGENIC
SBS	Chr11	9540247	A-C	HET	INTERGENIC
SBS	Chr12	23353027	G-T	HET	INTRON
SBS	Chr12	8706389	G-A	HET	INTERGENIC
SBS	Chr12	8706390	G-A	HET	INTERGENIC
SBS	Chr2	14866176	A-G	HOMO	UTR_3_PRIME
SBS	Chr2	26164165	T-C	HOMO	UTR_5_PRIME
SBS	Chr3	16831602	T-C	HET	INTERGENIC
SBS	Chr3	18290959	G-A	HET	INTERGENIC
SBS	Chr3	23491897	A-T	HET	INTERGENIC
SBS	Chr3	23552634	C-T	HET	INTERGENIC
SBS	Chr3	31501564	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g55370
SBS	Chr4	1724403	T-C	HET	INTRON
SBS	Chr5	24724013	G-C	HET	INTERGENIC
SBS	Chr5	26386722	C-T	HET	UTR_3_PRIME
SBS	Chr5	29714978	G-A	HET	INTERGENIC
SBS	Chr5	4582177	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08400
SBS	Chr6	8366028	G-A	HET	INTERGENIC
SBS	Chr7	10575173	A-G	HET	INTERGENIC
SBS	Chr7	9300138	C-T	HOMO	INTRON
SBS	Chr9	10798085	G-T	HET	SYNONYMOUS_CODING
SBS	Chr9	20008035	C-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	5272579	5272583	4
Deletion	Chr1	5530582	5530587	5	LOC_Os01g10460
Deletion	Chr6	6372529	6372532	3	LOC_Os06g11970
Deletion	Chr10	8408305	8408310	5	LOC_Os10g16870
Deletion	Chr6	8829542	8829551	9	LOC_Os06g15570
Deletion	Chr4	8902052	8902056	4
Deletion	Chr10	10695472	10695488	16
Deletion	Chr10	11049001	11115000	66000	8
Deletion	Chr6	12029020	12029043	23
Deletion	Chr9	12630321	12630325	4
Deletion	Chr11	13948589	13948600	11
Deletion	Chr6	14158631	14158643	12
Deletion	Chr6	14200943	14200944	1
Deletion	Chr10	15299893	15300044	151
Deletion	Chr2	15595112	15595115	3
Deletion	Chr10	17310374	17310376	2
Deletion	Chr10	18129752	18129758	6	LOC_Os10g33990
Deletion	Chr5	18762253	18762274	21
Deletion	Chr3	23625378	23625400	22
Deletion	Chr8	24209315	24209336	21
Deletion	Chr4	26691234	26691237	3	LOC_Os04g45140
Deletion	Chr6	27684273	27684283	10
Deletion	Chr1	28394213	28394219	6
Deletion	Chr5	28817833	28817844	11	LOC_Os05g50270
Deletion	Chr4	30867905	30867906	1
Deletion	Chr3	31522308	31522309	1
Deletion	Chr3	31854791	31854794	3
Deletion	Chr1	33714992	33714997	5
Deletion	Chr4	33744511	33744519	8
Deletion	Chr1	41170450	41170454	4	LOC_Os01g71140

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20006690	20006691	2	LOC_Os01g36170
Insertion	Chr2	19578310	19578310	1
Insertion	Chr5	19049178	19049179	2
Insertion	Chr7	13242113	13242114	2
Insertion	Chr8	20131861	20131862	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3367392	3431959	2
Inversion	Chr12	7651724	7901982
Inversion	Chr10	8869142	11049274
Inversion	Chr10	9880192	11132768	LOC_Os10g19342

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	7651761	Chr10	15300112
Translocation	Chr12	7901981	Chr10	15299894
Translocation	Chr3	32459922	Chr1	26315693

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