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Mutant Information

Mutant Name	FN919-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN919-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21264982	C-T	HET	INTERGENIC
SBS	Chr1	24830361	C-T	HET	INTERGENIC
SBS	Chr1	32793329	C-A	HET	INTERGENIC
SBS	Chr1	33798088	A-G	HET	INTERGENIC
SBS	Chr1	35731286	C-T	HOMO	INTERGENIC
SBS	Chr1	36065994	C-T	HET	INTERGENIC
SBS	Chr10	11386778	G-A	HET	INTRON
SBS	Chr10	11386779	C-A	HET	INTRON
SBS	Chr10	12300840	C-T	HOMO	INTERGENIC
SBS	Chr10	482984	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	14914276	C-T	HET	INTERGENIC
SBS	Chr11	8896185	C-T	HOMO	INTERGENIC
SBS	Chr12	398810	C-A	HET	INTERGENIC
SBS	Chr12	8640412	A-C	HET	INTRON
SBS	Chr2	26170850	G-A	HET	INTRON
SBS	Chr2	26935420	T-A	HET	INTERGENIC
SBS	Chr2	27920633	T-A	HET	INTERGENIC
SBS	Chr3	18548193	G-A	HET	INTERGENIC
SBS	Chr3	19239660	T-C	HET	INTERGENIC
SBS	Chr3	19329637	G-A	HET	INTERGENIC
SBS	Chr3	28530674	T-C	HET	INTERGENIC
SBS	Chr3	8927780	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g16190
SBS	Chr4	15882627	T-A	HOMO	INTERGENIC
SBS	Chr4	30429484	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51380
SBS	Chr4	8188421	T-C	HET	INTRON
SBS	Chr5	13678420	C-T	HET	INTERGENIC
SBS	Chr5	29262486	C-T	HET	INTERGENIC
SBS	Chr6	10946066	A-T	HET	INTERGENIC
SBS	Chr6	13451574	C-T	HET	INTRON
SBS	Chr6	21359061	G-A	HET	INTERGENIC
SBS	Chr6	25472902	G-A	HET	INTRON
SBS	Chr6	8704932	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	9644612	C-T	HET	INTERGENIC
SBS	Chr7	16599335	A-G	HET	INTERGENIC
SBS	Chr7	20629402	T-C	HET	INTERGENIC
SBS	Chr7	21565052	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36060
SBS	Chr7	24005781	C-A	HET	INTERGENIC
SBS	Chr7	4421633	T-C	HET	INTERGENIC
SBS	Chr7	5965408	A-C	HET	INTERGENIC
SBS	Chr8	3072523	A-G	HOMO	INTERGENIC
SBS	Chr8	8894933	C-A	HOMO	INTERGENIC
SBS	Chr9	19158508	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	19158509	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g32095
SBS	Chr9	20980101	T-C	HET	INTRON

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	159515	159526	11
Deletion	Chr8	2927123	2927126	3
Deletion	Chr1	3397528	3397529	1	LOC_Os01g07200
Deletion	Chr7	4490445	4490447	2
Deletion	Chr6	5143758	5143768	10	LOC_Os06g10100
Deletion	Chr6	6196247	6196251	4
Deletion	Chr12	6730973	6730977	4	LOC_Os12g12260
Deletion	Chr5	7957321	7957322	1
Deletion	Chr5	8629753	8629754	1
Deletion	Chr12	9286229	9286230	1
Deletion	Chr11	13493323	13493334	11
Deletion	Chr5	13738221	13738258	37
Deletion	Chr2	15599807	15599827	20
Deletion	Chr3	16410504	16410513	9
Deletion	Chr2	17450369	17450843	474	LOC_Os02g29380
Deletion	Chr5	17800891	17800915	24
Deletion	Chr11	19977005	19977006	1
Deletion	Chr3	20812322	20812331	9	LOC_Os03g37500
Deletion	Chr1	21954699	21954715	16	LOC_Os01g39050
Deletion	Chr9	22655673	22655680	7
Deletion	Chr3	22958045	22958051	6
Deletion	Chr3	23080036	23080068	32
Deletion	Chr3	23332547	23332552	5
Deletion	Chr2	23874085	23874088	3
Deletion	Chr7	24173001	24237000	64000	11
Deletion	Chr7	25701209	25701216	7
Deletion	Chr5	26797561	26797563	2
Deletion	Chr5	27231318	27231319	1
Deletion	Chr7	27422944	27422954	10
Deletion	Chr5	28233941	28233948	7
Deletion	Chr4	28925767	28925771	4
Deletion	Chr1	29546193	29546209	16	LOC_Os01g51390
Deletion	Chr3	34116357	34116363	6

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2329880	2329881	2
Insertion	Chr10	22604476	22604484	9
Insertion	Chr11	4803269	4803270	2
Insertion	Chr4	18506101	18506101	1
Insertion	Chr4	3167159	3167160	2
Insertion	Chr4	34730832	34730835	4
Insertion	Chr5	20428418	20428418	1
Insertion	Chr7	4570092	4570093	2
Insertion	Chr7	5676264	5676264	1
Insertion	Chr8	6003459	6003460	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6640205	6719172
Inversion	Chr12	6640221	6719185
Inversion	Chr1	7245364	8854939	2
Inversion	Chr1	7286531	8854935	LOC_Os01g15740
Inversion	Chr1	10060500	10906066

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1208008	Chr5	12013402	2
Translocation	Chr6	11983751	Chr4	12439019
Translocation	Chr3	13030451	Chr1	7297269
Translocation	Chr3	13030460	Chr1	7287550
Translocation	Chr11	15308530	Chr6	30259199
Translocation	Chr11	16725353	Chr10	7881784	2
Translocation	Chr7	24172638	Chr1	7447676	LOC_Os07g40310
Translocation	Chr7	24237291	Chr1	7470465	LOC_Os07g40434
Translocation	Chr11	24831650	Chr6	7782063	LOC_Os06g13960

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