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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN930-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN930-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13279239	T-C	HET	INTRON
SBS	Chr1	40203401	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g69160
SBS	Chr10	12469035	G-A	HET	INTERGENIC
SBS	Chr10	16502180	G-A	HOMO	INTERGENIC
SBS	Chr10	4944945	T-C	HET	INTERGENIC
SBS	Chr10	8625262	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17170
SBS	Chr11	11974037	C-T	HOMO	INTRON
SBS	Chr11	18663779	G-A	HET	INTRON
SBS	Chr12	25970238	T-C	HOMO	INTRON
SBS	Chr2	11535329	T-A	HOMO	INTERGENIC
SBS	Chr2	8275315	A-T	HET	INTERGENIC
SBS	Chr3	21407364	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g38570
SBS	Chr3	32278313	C-G	HOMO	INTERGENIC
SBS	Chr3	36154563	A-T	HET	INTERGENIC
SBS	Chr5	28102233	G-C	HET	INTRON
SBS	Chr5	29751068	C-A	HET	INTERGENIC
SBS	Chr6	20449133	G-T	HET	INTERGENIC
SBS	Chr6	27076574	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44820
SBS	Chr6	27076601	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44820
SBS	Chr6	30253004	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49960
SBS	Chr6	7274161	A-T	HET	INTERGENIC
SBS	Chr7	14316455	A-G	HET	INTERGENIC
SBS	Chr7	24734309	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g41270
SBS	Chr7	24736326	C-T	HOMO	INTERGENIC
SBS	Chr7	24736346	T-C	HOMO	INTERGENIC
SBS	Chr8	13870341	G-C	HET	INTERGENIC
SBS	Chr8	18391490	G-C	HOMO	INTERGENIC
SBS	Chr8	19225545	A-G	HET	INTRON
SBS	Chr9	7134511	G-A	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	253661	253668	7	LOC_Os04g01340
Deletion	Chr8	450944	450945	1
Deletion	Chr6	4095785	4095794	9
Deletion	Chr3	8440624	8440636	12
Deletion	Chr8	10726054	10726063	9
Deletion	Chr1	11940758	11943493	2735
Deletion	Chr6	14083096	14083097	1
Deletion	Chr8	15084798	15084808	10
Deletion	Chr8	16267901	16276886	8985	3
Deletion	Chr9	22365338	22365341	3
Deletion	Chr1	23957863	23957864	1
Deletion	Chr6	24710500	24710501	1
Deletion	Chr8	25955159	25955166	7
Deletion	Chr8	27236492	27236500	8
Deletion	Chr3	28592792	28639834	47042	10
Deletion	Chr11	28989005	28989006	1
Deletion	Chr4	33141867	33141877	10
Deletion	Chr4	34417043	34417046	3
Deletion	Chr1	39067242	39067246	4

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6033089	6429534

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr10	12990786	Chr7	13127561
Translocation	Chr9	13255700	Chr8	3855406
Translocation	Chr8	16788231	Chr3	19478453
Translocation	Chr5	26352389	Chr1	2174255

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