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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1136559	C-A	HET	INTERGENIC
SBS	Chr1	33779982	G-T	HET	INTERGENIC
SBS	Chr10	11343098	G-A	HET	INTRON
SBS	Chr10	12427593	A-G	HOMO	INTERGENIC
SBS	Chr10	19885022	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g37170
SBS	Chr10	19885023	G-A	HOMO	STOP_GAINED	LOC_Os10g37170
SBS	Chr10	19885024	G-A	HOMO	STOP_GAINED	LOC_Os10g37170
SBS	Chr10	3192187	G-T	HOMO	INTERGENIC
SBS	Chr12	16584709	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28090
SBS	Chr2	31991862	T-C	HET	INTERGENIC
SBS	Chr3	1053666	G-C	HET	INTERGENIC
SBS	Chr3	176030	C-G	HET	INTERGENIC
SBS	Chr3	1873002	C-A	HET	INTERGENIC
SBS	Chr3	21033225	T-C	HOMO	INTERGENIC
SBS	Chr3	23921682	A-T	HET	INTERGENIC
SBS	Chr3	29166787	G-A	HET	INTERGENIC
SBS	Chr4	18395644	C-T	HET	INTERGENIC
SBS	Chr4	29828208	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g50020
SBS	Chr5	10066605	A-T	HET	INTERGENIC
SBS	Chr5	10701740	C-T	HOMO	INTERGENIC
SBS	Chr6	20459619	C-T	HOMO	INTERGENIC
SBS	Chr6	28138597	T-G	HOMO	INTERGENIC
SBS	Chr7	7853027	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr8	28326528	T-A	HOMO	INTERGENIC
SBS	Chr8	6245698	T-C	HOMO	INTRON
SBS	Chr9	13614496	C-T	HET	INTERGENIC
SBS	Chr9	22441522	T-A	HET	INTERGENIC
SBS	Chr9	7063039	C-G	HET	INTERGENIC
SBS	Chr9	9781911	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16010

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	432191	432192	1
Deletion	Chr1	947453	947458	5	LOC_Os01g02740
Deletion	Chr11	2443099	2443102	3
Deletion	Chr5	3792782	3792786	4	LOC_Os05g07190
Deletion	Chr12	4511001	4560000	49000	6
Deletion	Chr2	5001931	5015467	13536	LOC_Os02g09730
Deletion	Chr5	5460197	5485517	25320	6
Deletion	Chr10	6494621	6494629	8
Deletion	Chr11	9281570	9281576	6
Deletion	Chr2	13341219	13341222	3
Deletion	Chr8	14680723	14680724	1
Deletion	Chr4	14982001	15161000	179000	25
Deletion	Chr5	16575508	16575516	8
Deletion	Chr1	19468191	19468193	2	LOC_Os01g35170
Deletion	Chr3	20072374	20072377	3	LOC_Os03g36180
Deletion	Chr8	23297202	23297204	2
Deletion	Chr12	23759721	23759723	2
Deletion	Chr1	23891637	23891648	11
Deletion	Chr8	24822272	24822277	5
Deletion	Chr12	25422317	25422326	9
Deletion	Chr11	26564030	26564031	1
Deletion	Chr3	26943587	26943588	1	LOC_Os03g47600
Deletion	Chr3	30302651	30302660	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	3680866	3680866	1
Insertion	Chr5	11773857	11773857	1	LOC_Os05g20129
Insertion	Chr5	5300443	5300443	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1398104	1780238
Inversion	Chr10	11282046	11665292	2
Inversion	Chr8	28034189	28377859	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	246908	Chr4	17017370
Translocation	Chr8	388894	Chr2	5015471	LOC_Os02g09730
Translocation	Chr8	388896	Chr2	5001934
Translocation	Chr6	20829766	Chr4	23733017	2
Translocation	Chr6	20830350	Chr4	23733049	LOC_Os04g39840

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