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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13762378	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24410
SBS	Chr1	14244358	G-T	HET	INTERGENIC
SBS	Chr1	19862288	G-T	HET	INTERGENIC
SBS	Chr1	25913578	G-A	HET	INTERGENIC
SBS	Chr1	42314248	A-C	HET	INTERGENIC
SBS	Chr1	6363796	C-T	HET	INTERGENIC
SBS	Chr10	10426270	T-A	HOMO	INTERGENIC
SBS	Chr10	15968712	C-T	HET	INTERGENIC
SBS	Chr10	22476491	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g41760
SBS	Chr10	672882	T-A	HOMO	INTERGENIC
SBS	Chr11	17287190	C-A	HOMO	INTERGENIC
SBS	Chr11	17287191	C-A	HOMO	INTERGENIC
SBS	Chr11	24270495	C-T	HOMO	INTERGENIC
SBS	Chr11	24273337	T-C	HOMO	INTERGENIC
SBS	Chr11	26547676	C-T	HOMO	INTRON
SBS	Chr12	25815612	T-A	HET	UTR_3_PRIME
SBS	Chr2	28736446	G-A	HET	INTERGENIC
SBS	Chr2	4592200	A-G	HET	INTERGENIC
SBS	Chr3	12071705	T-A	HET	UTR_3_PRIME
SBS	Chr3	12705674	C-T	HOMO	INTRON
SBS	Chr3	26938960	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	29329600	C-T	HET	INTRON
SBS	Chr3	30769790	G-T	HET	INTRON
SBS	Chr3	30769792	C-A	HET	INTRON
SBS	Chr3	30769794	A-T	HET	INTRON
SBS	Chr3	4347645	T-A	HET	INTERGENIC
SBS	Chr4	13262006	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g23240
SBS	Chr4	5757085	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g10600
SBS	Chr5	16897098	T-A	HOMO	UTR_3_PRIME
SBS	Chr5	17840492	C-A	HET	INTERGENIC
SBS	Chr5	3822719	C-T	HET	INTERGENIC
SBS	Chr6	14970087	C-T	HOMO	INTERGENIC
SBS	Chr6	26658106	T-A	HET	INTRON
SBS	Chr7	10808021	G-A	HOMO	INTERGENIC
SBS	Chr7	20500167	C-T	HOMO	INTRON
SBS	Chr7	2630111	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g05600
SBS	Chr7	4395036	T-A	HET	INTERGENIC
SBS	Chr8	1351532	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	13667458	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	13667464	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	367106	T-A	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3987115	3987116	1
Deletion	Chr12	7793895	7793896	1
Deletion	Chr9	9178013	9178024	11	LOC_Os09g15120
Deletion	Chr5	10931697	10931698	1	LOC_Os05g18810
Deletion	Chr1	12699874	12699879	5
Deletion	Chr9	14918266	14918272	6	LOC_Os09g24970
Deletion	Chr7	15344151	15344160	9
Deletion	Chr5	16598855	16598874	19
Deletion	Chr9	18130730	18130961	231
Deletion	Chr7	18846637	18846638	1
Deletion	Chr5	19424100	19424101	1
Deletion	Chr11	19437951	19437953	2	LOC_Os11g32900
Deletion	Chr4	19682462	19682465	3
Deletion	Chr1	21013225	21013353	128	LOC_Os01g37580
Deletion	Chr6	25029418	25029428	10
Deletion	Chr11	25387235	25387240	5
Deletion	Chr11	25525973	25525974	1
Deletion	Chr4	27034352	27034353	1	LOC_Os04g45700

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	27711045	27711050	6
Insertion	Chr2	21771740	21771741	2
Insertion	Chr3	5260532	5260535	4
Insertion	Chr7	8499708	8499710	3	LOC_Os07g14850
Insertion	Chr8	27430859	27430860	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3523491	3554083	LOC_Os03g06960
Inversion	Chr3	3523577	3561138
Inversion	Chr3	15783594	15795900	2
Inversion	Chr3	15783606	15795900	2
Inversion	Chr1	22956132	23224255	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	22701512	Chr4	28778256	LOC_Os06g38320

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