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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12627072	G-A	HET	INTERGENIC
SBS	Chr1	41722177	G-C	HET	INTERGENIC
SBS	Chr10	11905849	G-T	HET	INTERGENIC
SBS	Chr10	15838413	G-A	HET	INTERGENIC
SBS	Chr10	7684033	G-A	HET	INTERGENIC
SBS	Chr11	10845900	C-T	HOMO	INTRON
SBS	Chr11	666338	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02320
SBS	Chr2	5455350	C-G	HOMO	INTERGENIC
SBS	Chr3	11535559	C-A	HET	INTERGENIC
SBS	Chr3	27054328	T-A	HOMO	INTERGENIC
SBS	Chr3	8102294	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14860
SBS	Chr4	10841584	C-G	HET	INTRON
SBS	Chr4	1981783	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g04240
SBS	Chr4	34563303	T-A	HET	INTERGENIC
SBS	Chr5	27563516	C-T	HOMO	INTERGENIC
SBS	Chr5	3688746	C-T	HET	INTERGENIC
SBS	Chr5	8026659	G-C	HOMO	INTERGENIC
SBS	Chr5	8026660	C-A	HOMO	INTERGENIC
SBS	Chr6	21809538	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	27802818	C-G	HET	INTERGENIC
SBS	Chr6	6459697	T-G	HET	INTERGENIC
SBS	Chr7	10483236	G-A	HET	INTERGENIC
SBS	Chr7	18930255	C-T	HET	INTRON
SBS	Chr7	6894587	C-T	HET	INTERGENIC
SBS	Chr7	8619785	G-T	HET	INTERGENIC
SBS	Chr8	11545794	G-A	HET	INTERGENIC
SBS	Chr8	18747411	C-A	HET	INTERGENIC
SBS	Chr9	14036246	G-A	HET	INTERGENIC
SBS	Chr9	16395109	A-G	HOMO	INTRON
SBS	Chr9	8361853	G-C	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	469678	469685	7
Deletion	Chr6	1118471	1118472	1
Deletion	Chr1	4112417	4112423	6
Deletion	Chr6	5506896	5506905	9
Deletion	Chr7	5804369	5804370	1
Deletion	Chr11	9594563	9594564	1
Deletion	Chr11	9602754	9771779	169025	29
Deletion	Chr9	10472407	10472430	23
Deletion	Chr6	11393444	11393466	22
Deletion	Chr7	12897464	12897474	10	LOC_Os07g22880
Deletion	Chr3	14325001	14402000	77000	12
Deletion	Chr3	14413001	14552000	139000	31
Deletion	Chr4	16567103	16567106	3
Deletion	Chr3	17447298	17447306	8
Deletion	Chr4	18285758	18285765	7
Deletion	Chr7	18867605	18867606	1
Deletion	Chr4	19932029	19932039	10
Deletion	Chr4	19975658	19975695	37
Deletion	Chr2	20397157	20397693	536	LOC_Os02g34100
Deletion	Chr4	21935306	21935319	13
Deletion	Chr11	23712930	23712936	6
Deletion	Chr11	26516305	26516306	1
Deletion	Chr11	26567497	26567498	1
Deletion	Chr4	30808086	30808087	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11768578	11768579	2
Insertion	Chr2	9518323	9518324	2
Insertion	Chr5	22332588	22332589	2
Insertion	Chr8	20486314	20486317	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr4	744942	746529
Inversion	Chr11	10858122	11896256
Inversion	Chr1	18625044	39124989
Inversion	Chr8	23675644	24166898

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2428570	Chr4	19650639	LOC_Os12g05370
Translocation	Chr12	2433785	Chr4	19650597	LOC_Os12g05380

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